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Maize
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Maize
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion

Predictor Summary:
  • peroxisome 1
  • mitochondrion 3
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion
Any Predictor:mitochondrion, peroxisome
MultiLoc:peroxisome
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:plastid
YLoc:mitochondrion
 plastid: 22065420
plastid: 23198870
mitochondrion: 27297264
mitochondrion: 29575040
msms PMID: 27297264 doi
D Dahal, KJ Newton, BP Mooney
Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.
msms PMID: 23198870 doi
M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk
Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.
msms PMID: 29575040 doi
WQ Wang, Y Wang, Q Zhang, IM Møller, SQ Song
Department of Molecular Biology and Genetics, Aarhus University, DK-4200 Slagelse, Denmark., Key Laboratory of Plant Molecular Physiology, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China., Key Laboratory of Plant Resources and Beijing Botanical Garden, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China.
msms PMID: 22065420 doi
W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk
Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.
PPI

Inferred distinct locusB in Crop

locusBlocations
Zm00001d013571_P001
Zm00001d017475_P002
Zm00001d017793_P001
Zm00001d018045_P001
Zm00001d033419_P001
Zm00001d037221_P001
Zm00001d044836_P001
Zm00001d051589_P001
Zm00001d052256_P001

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G66720.1 Zm00001d017793_P001 AT3G27960.1 21798944
AT5G66720.1 Zm00001d051589_P001 AT3G27960.1 21798944
AT5G66720.1 Zm00001d018045_P001 AT3G47620.1 21798944
AT5G66720.1 Zm00001d037221_P001 AT3G47620.1 21798944
AT5G66720.1 Zm00001d044836_P001 AT3G47620.1 21798944
AT5G66720.1 Zm00001d052256_P001 AT3G47620.1 21798944
AT5G66720.1 Zm00001d017475_P002 AT3G48150.1 21798944
AT5G66720.1 Zm00001d013571_P001 AT4G19700.1 21798944
AT5G66720.1 Zm00001d033419_P001 AT4G19700.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
EER90674 Sorghum mitochondrion, plastid 92.09 92.49
Zm00001d034575_P001 Maize plastid 88.68 89.06
Os03t0809300-01 Rice plastid 77.78 75.99
TraesCS5B01G470500.1 Wheat plastid 75.21 73.49
TraesCS5D01G472400.1 Wheat plastid 75.43 73.39
TraesCS5A01G460700.1 Wheat plastid 71.15 72.23
GSMUA_Achr8P31180_001 Banana cytosol 24.36 70.37
VIT_04s0023g01400.t01 Wine grape plastid 44.87 55.41
Solyc04g080090.2.1 Tomato mitochondrion, plastid 43.59 53.83
KRH69944 Soybean cytosol, plastid 41.67 53.57
GSMUA_Achr6P35080_001 Banana plastid 53.42 52.97
PGSC0003DMT400013180 Potato mitochondrion 44.02 52.42
GSMUA_Achr9P09210_001 Banana mitochondrion, plastid 52.14 51.91
KRH08301 Soybean cytosol 41.88 51.85
GSMUA_AchrUn_... Banana plastid 47.65 47.25
AT5G66720.1 Thale cress plastid 41.45 46.86
KRH28642 Soybean mitochondrion 41.67 46.1
HORVU6Hr1G019900.1 Barley plastid 42.31 46.05
CDY60192 Canola mitochondrion 45.73 45.82
Bra038489.1-P Field mustard mitochondrion 45.73 45.82
AT4G16580.1 Thale cress mitochondrion 45.09 45.18
VIT_18s0001g12160.t01 Wine grape extracellular 50.0 45.09
CDY40532 Canola mitochondrion 45.09 44.99
Solyc12g089090.1.1 Tomato mitochondrion 49.79 44.89
PGSC0003DMT400039957 Potato mitochondrion 49.36 44.51
CDY53852 Canola plastid 38.89 44.5
Bra012095.1-P Field mustard plastid 38.89 44.5
KRH76843 Soybean plastid 41.88 44.44
CDY30759 Canola plastid 38.89 44.39
KRH15248 Soybean mitochondrion 47.44 43.87
KRH05793 Soybean mitochondrion 47.22 43.68
Zm00001d051202_P001 Maize peroxisome 21.79 30.72
Zm00001d051200_P001 Maize cytosol 21.58 30.42
Zm00001d048203_P002 Maize nucleus, peroxisome, plastid 22.44 29.33
Zm00001d047249_P001 Maize cytosol 19.66 29.11
Zm00001d039745_P001 Maize plastid 19.87 28.27
Zm00001d051199_P001 Maize cytosol 17.95 26.42
GSMUA_Achr8P31190_001 Banana endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, plastid, vacuole 19.23 26.32
Zm00001d017325_P001 Maize cytoskeleton, cytosol, peroxisome 19.02 23.55
Zm00001d014291_P001 Maize plastid 24.15 20.0
Protein Annotations
KEGG:04658+3.1.3.16KEGG:04660+3.1.3.16EntrezGene:103625788Gene3D:3.60.40.10MapMan:35.1UniProt:A0A1D6GF31
ProteinID:AQK62178.1ncoils:CoilGO:GO:0003674GO:GO:0003824InterPro:IPR001932InterPro:IPR036457
PFAM:PF07228InterPro:PPM-type_dom_sfInterPro:PPM-type_phosphatase_domPFscan:PS51746PANTHER:PTHR12320PANTHER:PTHR12320:SF16
SMART:SM00331SMART:SM00332SUPFAM:SSF81606UniParc:UPI000220EBC7EnsemblPlantsGene:Zm00001d013027EnsemblPlants:Zm00001d013027_P002
EnsemblPlants:Zm00001d013027_T002SEG:seg::::
Description
Probable protein phosphatase 2C 55
Coordinates
chr5:+:3457051..3461537
Molecular Weight (calculated)
49524.3 Da
IEP (calculated)
8.347
GRAVY (calculated)
-0.251
Length
468 amino acids
Sequence
(BLAST)
001: MLASYGGGGR GVHLSSHKDI LLGRGGRSFL LGNTWFLLST YPARLLHTTD RRAPAAFLAV INRPPCMRPH RAGQGLLQRG GIVMAACGYA LGRAELGAAK
101: RQQPDKDPSA GTRSSNVAAT GSLGSAARPD VSFRYRGADS CKKVAASLKS SEPWGNRAFW TNAAGPGWKL SFAVEPWTKG FSTSCAAPYS AGATEHQLSL
201: DEKVDNSTVA SDSDGKSPVS EKLKFLSGSC YLPHPDKEAT GGEDAHFISI DEHVIGVADG VGGWADVGID AGLYAKELMR NSMSAIKDEP EGTIDPTRVL
301: EKAYMSTKAR GSSTACIITL KDQGIHAVNL GDSGFVVVRD GRTVLRSPSQ QHDFNLTYQL ESGGGSDLPS SAQVFHFPVA PGDVIVAGTD GLFDNLYNNE
401: ISGVIVEALR VGLEPQVAAQ KIAALARQRA TDKNRQSPFA SAAQEAGYRY YGGKLDDITV VVSYVKSA
Best Arabidopsis Sequence Match ( AT4G16580.1 )
(BLAST)
001: MLPVRESLQK QVKILIGLGN LGFGGYRGLY TRFTNPNGFL EPASSDLLLI NERRNLSVIG AVSRTFSVPS VSGPAFQVCG YHIDLLLSDP CKSMASLGSK
101: SLFVDRHSAS LVSKRFTGGM VSGDGPNRGR ISMRLRGKDH NEKSTICAYF AYRGAKRWIY LNQQRRGMGF RGLHSSLSNR LSAGNAPDVS LDNSVTDEQV
201: RDSSDSVAAK LCTKPLKLVS GSCYLPHPDK EATGGEDAHF ICAEEQALGV ADGVGGWAEL GIDAGYYSRE LMSNSVNAIQ DEPKGSIDPA RVLEKAHTCT
301: KSQGSSTACI IALTNQGLHA INLGDSGFMV VREGHTVFRS PVQQHDFNFT YQLESGRNGD LPSSGQVFTV AVAPGDVIIA GTDGLFDNLY NNEITAIVVH
401: AVRANIDPQV TAQKIAALAR QRAQDKNRQT PFSTAAQDAG FRYYGGKLDD ITVVVSYVAA SKEEGKH
Arabidopsis Description
Probable protein phosphatase 2C 55 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUK9]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.