Factsheet for Zm00001d039745_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 20089766
plastid: 22065420

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG31802	Sorghum	plastid	90.58	91.98
TraesCS3A01G100000.1	Wheat	plastid	79.94	81.68
TraesCS3B01G116700.1	Wheat	plastid	79.33	81.06
TraesCS3D01G100600.1	Wheat	plastid	79.33	81.06
Os01t0164600-01	Rice	plastid	79.03	78.55
HORVU3Hr1G018110.1	Barley	plastid	79.94	74.5
GSMUA_AchrUn_...	Banana	cytosol, peroxisome, plastid	51.67	68.27
Solyc06g007350.2.1	Tomato	plastid	54.41	58.5
VIT_06s0004g07360.t01	Wine grape	plastid	55.02	58.2
PGSC0003DMT400052991	Potato	plastid	52.89	56.86
KRH30165	Soybean	cytosol	38.3	56.76
KRG98206	Soybean	cytosol	53.19	54.18
AT2G30170.1	Thale cress	mitochondrion, plastid	48.63	53.69
CDY10717	Canola	plastid	48.02	52.49
Bra018331.1-P	Field mustard	plastid	47.72	51.99
CDY02041	Canola	plastid	47.42	51.83
Zm00001d051200_P001	Maize	cytosol	27.36	27.11
Zm00001d051202_P001	Maize	peroxisome	27.36	27.11
Zm00001d048203_P002	Maize	nucleus, peroxisome, plastid	27.96	25.7
Zm00001d047249_P001	Maize	cytosol	22.8	23.73
Zm00001d051199_P001	Maize	cytosol	22.49	23.27
Zm00001d034575_P001	Maize	plastid	28.88	20.39
Zm00001d013027_P002	Maize	mitochondrion	28.27	19.87
Zm00001d017325_P001	Maize	cytoskeleton, cytosol, peroxisome	21.28	18.52
Zm00001d014291_P001	Maize	plastid	29.79	17.35

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	MapMan:1.1.1.4.1.4	EntrezGene:100282081	Gene3D:3.60.40.10	UniProt:B6T3C7
EMBL:EU959492	GO:GO:0003674	GO:GO:0003824	InterPro:IPR001932	InterPro:IPR036457	ProteinID:ONM29866.1
PFAM:PF07228	InterPro:PPM-type_dom_sf	InterPro:PPM-type_phosphatase_dom	PFscan:PS51746	PANTHER:PTHR12320	SMART:SM00331
SMART:SM00332	SUPFAM:SSF81606	UniParc:UPI000182BE39	EnsemblPlantsGene:Zm00001d039745	EnsemblPlants:Zm00001d039745_P001	EnsemblPlants:Zm00001d039745_T001
SEG:seg	:	:	:	:	:

Description

Protein phosphatase 2C

Coordinates

chr3:+:13650821..13654111

Molecular Weight (calculated)

35240.7 Da

IEP (calculated)

4.981

GRAVY (calculated)

-0.133

Length

329 amino acids

Sequence
(BLAST)

001: MVASTASRLS PPRFSTPSPS LHPPNRRSRF SPVRAAKLEA VLSIGAHLIP HPRKAASGGE DAFFANSDAG GVFAIADGVS GWAEKNVNPA LFSRELMRNS
101: SNFLNDEAVS HDPQILLMKA HAATSSIGSA TVIIAMLEKT GTLKIASVGD CGLKVIRKGQ VMFSISPQEH YFDCPYQISS EAEGQTYKDA LVCSVNLMEG
201: DIIVSGSDGL FDNIFDQEIV SIISESPSVD EAAKALAELA RKHSVDVRFD SPYSMEARSR GFDVPWWKKL LGGKLIGGKM DDITVVVAQV KTVVVPEDEV
301: QGGDTEEQKG NEQGAAAVVA YKMNDEEVA

Best Arabidopsis Sequence Match ( AT2G30170.1 )
(BLAST)

001: MAIPVTRMMV PHAIPSLRLS HPNPSRVDFL CRCAPSEIQP LRPELSLSVG IHAIPHPDKV EKGGEDAFFV SSYRGGVMAV ADGVSGWAEQ DVDPSLFSKE
101: LMANASRLVD DQEVRYDPGF LIDKAHTATT SRGSATIILA MLEEVGILKI GNVGDCGLKL LREGQIIFAT APQEHYFDCP YQLSSEGSAQ TYLDASFSIV
201: EVQKGDVIVM GSDGLFDNVF DHEIVSIVTK HTDVAESSRL LAEVASSHSR DTEFESPYAL EARAKGFDVP LWKKVLGKKL TGGKLDDVTV IVAKVVSS

Arabidopsis Description

Probable protein phosphatase 2C 26 [Source:UniProtKB/Swiss-Prot;Acc:O64730]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.