Factsheet for VIT_04s0023g01400.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
peroxisome 1
extracellular 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_07s0031g02330.t01
VIT_07s0130g00490.t01
VIT_09s0002g07130.t01
VIT_10s0042g01070.t01
VIT_14s0066g01280.t01
VIT_16s0098g00600.t01
VIT_17s0000g06020.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G66720.1	VIT_09s0002g07130.t01	AT1G80040.1	21798944
AT5G66720.1	VIT_14s0066g01280.t01	AT3G27960.1	21798944
AT5G66720.1	VIT_17s0000g06020.t01	AT3G47620.1	21798944
AT5G66720.1	VIT_07s0031g02330.t01	AT3G48150.1	21798944
AT5G66720.1	VIT_07s0130g00490.t01	AT3G48150.1	21798944
AT5G66720.1	VIT_16s0098g00600.t01	AT3G49580.1	21798944
AT5G66720.1	VIT_10s0042g01070.t01	AT4G19700.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH69944	Soybean	cytosol, plastid	63.32	65.93
KRH08301	Soybean	cytosol	64.64	64.81
KRH28642	Soybean	mitochondrion	64.91	58.16
AT5G66720.1	Thale cress	plastid	60.42	55.31
Bra012095.1-P	Field mustard	plastid	58.31	54.03
CDY53852	Canola	plastid	58.05	53.79
KRH76843	Soybean	plastid	62.53	53.74
CDY30759	Canola	plastid	57.78	53.41
VIT_18s0001g12160.t01	Wine grape	extracellular	72.56	52.99
VIT_08s0007g05820.t01	Wine grape	cytosol	30.61	47.15
EER90674	Sorghum	mitochondrion, plastid	55.41	45.06
Zm00001d013027_P002	Maize	mitochondrion	55.41	44.87
Zm00001d034575_P001	Maize	plastid	54.62	44.42
Os03t0809300-01	Rice	plastid	55.67	44.05
VIT_18s0001g01220.t01	Wine grape	cytosol, peroxisome, plastid	29.55	43.24
VIT_08s0007g08670.t01	Wine grape	mitochondrion, nucleus, peroxisome	22.69	37.23
VIT_17s0000g07010.t01	Wine grape	cytosol, mitochondrion, peroxisome	22.43	37.12
VIT_06s0004g07360.t01	Wine grape	plastid	25.33	30.87
VIT_12s0055g01130.t01	Wine grape	plastid	26.39	12.95

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	EntrezGene:100261557	wikigene:100261557	Gene3D:3.60.40.10	MapMan:35.1
ProteinID:CCB44470	ProteinID:CCB44470.1	UniProt:F6GWY4	EMBL:FN594959	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0009507	GO:GO:0009536
GO:GO:0009570	InterPro:IPR001932	InterPro:IPR036457	EntrezGene:LOC100261557	wikigene:LOC100261557	PFAM:PF07228
InterPro:PPM-type_dom_sf	InterPro:PPM-type_phosphatase_dom	PFscan:PS51746	PANTHER:PTHR12320	PANTHER:PTHR12320:SF16	SMART:SM00331
SMART:SM00332	SUPFAM:SSF81606	TIGR:TC55496	UniParc:UPI0002109CFA	ArrayExpress:VIT_04s0023g01400	EnsemblPlantsGene:VIT_04s0023g01400
EnsemblPlants:VIT_04s0023g01400.t01	unigene:Vvi.5066	RefSeq:XP_002268376	RefSeq:XP_002268376.2	SEG:seg	:

Description

No Description!

Coordinates

chr4:-:17890614..17904556

Molecular Weight (calculated)

40030.7 Da

IEP (calculated)

5.039

GRAVY (calculated)

-0.168

Length

379 amino acids

Sequence
(BLAST)

001: MAASGSKAVS GDIYIDEITA TGNLSNFAKP TGVFFNDRSL SSCRKASMSL RNQEPPNRSL VCGYLIFDVT RRNCISNPLD GPWFKNFHTW SSSCYSAGAA
101: PDVSFGGSSS DEQLSKSAAS SDQAILGHRT LKLISGSCYL PHPDKEETGG EDAHFICIDE QAIGVADGVG GWADVGVDAG EYARELMSNS VTAIQEEPKG
201: SIDPSRVLEK AHSSTKAKGS STACIVALTD QGLQAINLGD SGFIVVRDGC TIFQSPVQQH GFNFTYQLES GRAGDLPSSG QVFTIPVAPG DVIVAGTDGL
301: FDNLYNSEVT AVVVHAVRAG LGPQVTAQKI AALARQRAQD RMRQTPFSTA AQDAGFRYYG GKLDDITVVV SFITSTSNG

Best Arabidopsis Sequence Match ( AT4G16580.1 )
(BLAST)

001: MLPVRESLQK QVKILIGLGN LGFGGYRGLY TRFTNPNGFL EPASSDLLLI NERRNLSVIG AVSRTFSVPS VSGPAFQVCG YHIDLLLSDP CKSMASLGSK
101: SLFVDRHSAS LVSKRFTGGM VSGDGPNRGR ISMRLRGKDH NEKSTICAYF AYRGAKRWIY LNQQRRGMGF RGLHSSLSNR LSAGNAPDVS LDNSVTDEQV
201: RDSSDSVAAK LCTKPLKLVS GSCYLPHPDK EATGGEDAHF ICAEEQALGV ADGVGGWAEL GIDAGYYSRE LMSNSVNAIQ DEPKGSIDPA RVLEKAHTCT
301: KSQGSSTACI IALTNQGLHA INLGDSGFMV VREGHTVFRS PVQQHDFNFT YQLESGRNGD LPSSGQVFTV AVAPGDVIIA GTDGLFDNLY NNEITAIVVH
401: AVRANIDPQV TAQKIAALAR QRAQDKNRQT PFSTAAQDAG FRYYGGKLDD ITVVVSYVAA SKEEGKH

Arabidopsis Description

Probable protein phosphatase 2C 55 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUK9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.