Factsheet for Zm00001d019343_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

plastid: 20089766
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d002027_P002
Zm00001d005300_P001
Zm00001d007842_P002
Zm00001d013559_P001
Zm00001d014640_P035
Zm00001d018742_P001
Zm00001d019712_P001
Zm00001d033404_P002
Zm00001d033859_P002
Zm00001d033861_P001
Zm00001d034212_P001
Zm00001d036507_P003
Zm00001d044874_P001
Zm00001d052194_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G72030.1	Zm00001d002027_P002	AT1G22920.1	21798944
AT1G72030.1	Zm00001d005300_P001	AT2G23290.1	21798944
AT1G72030.1	Zm00001d019712_P001	AT2G23290.1	21798944
AT1G72030.1	Zm00001d014640_P035	AT2G44950.1	21798944
AT1G72030.1	Zm00001d036507_P003	AT2G44950.1	21798944
AT1G72030.1	Zm00001d007842_P002	AT4G08150.1	21798944
AT1G72030.1	Zm00001d013559_P001	AT4G08150.1	21798944
AT1G72030.1	Zm00001d018742_P001	AT4G08150.1	21798944
AT1G72030.1	Zm00001d033404_P002	AT4G08150.1	21798944
AT1G72030.1	Zm00001d033859_P002	AT4G08150.1	21798944
AT1G72030.1	Zm00001d033861_P001	AT4G08150.1	21798944
AT1G72030.1	Zm00001d034212_P001	AT4G08150.1	21798944
AT1G72030.1	Zm00001d044874_P001	AT4G25200.1	21798944
AT1G72030.1	Zm00001d052194_P001	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER96202	Sorghum	plastid	74.57	73.06
VIT_18s0041g01190.t01	Wine grape	endoplasmic reticulum	11.0	69.57
Os07t0264800-01	Rice	plastid	65.98	65.31
TraesCS5A01G124000.1	Wheat	plastid	63.23	63.67
HORVU5Hr1G039960.1	Barley	plastid	62.54	61.9
TraesCS5D01G131900.1	Wheat	plastid	62.89	61.41
TraesCS5B01G123600.1	Wheat	plastid	61.86	61.22
GSMUA_Achr3P21890_001	Banana	cytosol	38.83	59.79
Bra003900.1-P	Field mustard	plastid	41.24	48.19
CDX68289	Canola	plastid	41.24	48.19
CDY36666	Canola	plastid	39.86	46.59
VIT_18s0041g01220.t01	Wine grape	cytosol	43.64	44.25
AT1G72030.1	Thale cress	plastid	38.83	44.14
KRH44932	Soybean	plastid	41.24	43.96
PGSC0003DMT400037096	Potato	cytosol, plastid	41.24	42.55
KRH23754	Soybean	plastid	39.52	42.44
Solyc03g025710.2.1	Tomato	cytosol	40.21	41.64
HORVU6Hr1G023720.1	Barley	plastid	23.71	38.98
PGSC0003DMT400084957	Potato	cytosol, plastid	35.4	38.87
PGSC0003DMT400018842	Potato	plastid	34.71	37.0
Solyc11g020000.1.1	Tomato	plastid	25.09	34.76
VIT_18s0041g01150.t01	Wine grape	mitochondrion	17.53	31.1

Protein Annotations

EnsemblPlants:Zm00001d019343_P001	EnsemblPlants:Zm00001d019343_T001	EnsemblPlantsGene:Zm00001d019343	Gene3D:3.40.630.30	GO:GO:0003674	GO:GO:0003824
GO:GO:0008080	GO:GO:0016740	InterPro:Acyl_CoA_acyltransferase	InterPro:GNAT_dom	InterPro:IPR000182	PANTHER:PTHR42919
PANTHER:PTHR42919:SF7	PFAM:PF00583	PFscan:PS51186	ProteinID:ONM52750.1	SEG:seg	SUPFAM:SSF55729
UniParc:UPI00084428EE	UniProt:A0A1D6HX05	MapMan:35.2	:	:	:

Description

GNAT-transcription factor 32Histone acetyltransferase HPA2 and related acetyltransferases

Coordinates

chr7:+:28785037..28786860

Molecular Weight (calculated)

32381.0 Da

IEP (calculated)

10.068

GRAVY (calculated)

-0.337

Length

291 amino acids

Sequence
(BLAST)

001: MAVLRASPPP FLPHPLSRPS QCKRRPTCRV VAATARPSPA PSRPRSGGVH GGRPKRGLLA ARRRPAEGRV PCLRATEAGV GAAGVAKEED EYLAREAGWG
101: VRRMARVGEE MRRVAQVQAE AFHVPVALFN DFFFDFFKAE VLSALIYRVR NSPPDRYACL VAEEAEAADQ PSKAPYEKIV GVVDCTVQDE DGILKHLRGA
201: DEYLYVSGIA VLPPFRRRKV GTALLKACEA LGLQWRHVFM VLRAYEDDDG ARGLYSKAGY RVVSRDPDWV SWVGRRRRVV MVKELPVHDD Q

Best Arabidopsis Sequence Match ( AT1G72030.1 )
(BLAST)

001: MGHLPQSLYS AAGPKFPYPG SSGLGVDQRK LTWSRFPVFL RCASTESLTS LTQNNAAEIE LKYLVSQHGW DVRRLNRDDE DEIRRVSLVQ AEAFHIPLAL
101: FDDFFFMFFQ AEVLSALLYK LKNSPPDRYA CLVAEQTSET ETLSSSSVVG VVDVTAQTES SVLRYFPGVE EYLYVSGLAV SKSQRRKKMA STLLKACDVL
201: CYLWGFKLLA LRAYEDDAAA RNLYSNAGYS VVETDPLWTS TWIGRKRRVL MSKRFS

Arabidopsis Description

Acyl-CoA N-acyltransferases (NAT) superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9C7G6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.