Factsheet for GSMUA_Achr5P20860_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P21120_001
GSMUA_Achr3P21890_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60630.1	GSMUA_Achr3P21890_001	AT1G72030.1	21798944
AT4G00150.1	GSMUA_Achr1P21120_001	AT1G60490.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol	74.55	69.41
GSMUA_Achr11P...	Banana	cytosol	74.73	59.83
GSMUA_Achr8P11160_001	Banana	cytosol	70.22	58.32
Zm00001d022034_P001	Maize	cytosol	26.53	48.04
Os10t0551200-01	Rice	cytosol	31.77	44.22
GSMUA_Achr6P36740_001	Banana	cytosol	36.46	42.35
GSMUA_Achr1P05940_001	Banana	plastid	39.53	41.48
Zm00001d047957_P001	Maize	cytosol	9.57	41.09
Zm00001d027292_P001	Maize	peroxisome	32.49	37.42
AT4G00150.1	Thale cress	cytosol, plastid	37.36	37.1
Zm00001d045589_P001	Maize	cytosol	33.21	36.8
Zm00001d035873_P001	Maize	cytosol, plastid	18.95	36.71
VIT_02s0154g00400.t01	Wine grape	cytosol	33.75	36.52
Bra037319.1-P	Field mustard	cytosol, plastid	37.0	36.48
CDY63061	Canola	cytosol, plastid	37.0	36.48
CDY63062	Canola	cytosol, plastid	37.0	36.48
Os04t0555000-01	Rice	cytosol	46.21	36.01
TraesCS6D01G229400.1	Wheat	mitochondrion	45.49	35.64
Os02t0662700-01	Rice	cytosol	45.49	35.54
TraesCS6A01G247200.1	Wheat	mitochondrion	45.13	35.51
HORVU1Hr1G053510.1	Barley	plastid	39.71	35.48
TraesCS6B01G277400.1	Wheat	mitochondrion	44.77	35.43
Os02t0663100-01	Rice	cytosol	45.67	35.38
TraesCS7D01G011400.1	Wheat	plastid	33.75	35.15
HORVU6Hr1G063650.1	Barley	cytosol, mitochondrion, nucleus, plasma membrane	44.58	35.14
EER87695	Sorghum	cytosol, plastid	32.49	35.09
Solyc08g078800.1.1	Tomato	plastid	29.96	35.02
TraesCS1D01G212800.1	Wheat	cytosol	39.17	34.94
TraesCS1A01G209400.1	Wheat	mitochondrion, plastid	39.35	34.88
EES11245	Sorghum	cytosol, nucleus, peroxisome	45.31	34.86
Os03t0103400-01	Rice	cytosol	29.78	34.81
EES05768	Sorghum	cytosol	44.95	34.78
TraesCS1B01G223400.1	Wheat	cytosol, plastid	39.17	34.78
Zm00001d002718_P001	Maize	cytosol	45.13	34.67
Zm00001d022162_P001	Maize	cytosol	10.29	34.55
EER91968	Sorghum	cytosol, mitochondrion	39.71	34.38
Os06t0105350-00	Rice	plastid	30.32	34.36
Zm00001d029855_P001	Maize	mitochondrion	39.89	34.26
VIT_15s0048g00270.t01	Wine grape	extracellular, golgi, mitochondrion, nucleus	47.65	34.06
Zm00001d017513_P001	Maize	cytosol, mitochondrion, nucleus	43.32	33.99
TraesCS4A01G482000.1	Wheat	plastid	33.21	33.89
Zm00001d051387_P001	Maize	cytosol	43.14	33.76
TraesCS5A01G535000.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	38.81	33.75
HORVU4Hr1G087700.2	Barley	cytosol, mitochondrion, peroxisome, plastid	38.63	33.54
Bra014479.1-P	Field mustard	cytosol, peroxisome, plastid	11.01	33.52
Zm00001d026158_P001	Maize	cytosol	43.32	33.43
TraesCS4B01G367300.1	Wheat	cytosol	38.63	33.33
TraesCS4D01G360200.1	Wheat	cytosol	38.45	33.18
Zm00001d018956_P001	Maize	plastid	8.48	32.87
PGSC0003DMT400066799	Potato	cytosol, nucleus, vacuole	45.13	32.55
Solyc01g090950.2.1	Tomato	cytosol	45.13	32.51
TraesCS7A01G014200.1	Wheat	plastid	33.94	32.36
CDX95633	Canola	cytosol	32.13	32.13
Bra003311.1-P	Field mustard	nucleus	29.24	32.02
CDX89065	Canola	nucleus	31.59	31.82
CDY48367	Canola	cytosol	32.13	31.56
CDY67934	Canola	cytosol	33.57	31.1
KRH75351	Soybean	cytosol	41.7	31.05
PGSC0003DMT400012104	Potato	plastid	39.17	31.0
KRG88927	Soybean	cytosol	41.34	30.74
KRH76167	Soybean	cytosol	40.79	30.66
CDY56248	Canola	cytosol	33.21	30.62
Zm00001d042852_P001	Maize	cytosol	13.54	30.49
AT3G60630.1	Thale cress	cytosol	34.12	30.34
AT2G45160.1	Thale cress	cytosol	35.02	30.31
KRH65380	Soybean	cytosol	39.89	30.19
CDX83398	Canola	cytosol	32.13	30.17
Zm00001d027569_P001	Maize	plastid	16.97	30.03
Bra000375.1-P	Field mustard	cytosol	31.95	29.16
OQU85680	Sorghum	mitochondrion	33.75	28.9
Zm00001d002023_P001	Maize	cytosol, mitochondrion, peroxisome, plastid	18.23	28.53
GSMUA_Achr3P29970_001	Banana	cytosol	26.9	28.06
Zm00001d031615_P001	Maize	cytosol	13.18	26.84
GSMUA_Achr4P07190_001	Banana	plastid	24.91	26.44
GSMUA_Achr4P03460_001	Banana	cytosol, plastid	24.73	25.66
GSMUA_Achr1P26740_001	Banana	cytosol	19.49	20.42

Protein Annotations

EnsemblPlants:GSMUA_Achr5P20860_001	EnsemblPlants:GSMUA_Achr5T20860_001	EnsemblPlantsGene:GSMUA_Achr5G20860_001	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	InterPro:TF_GRAS
PANTHER:PTHR31636	PANTHER:PTHR31636:SF52	PFAM:PF03514	PFscan:PS50985	SEG:seg	UniParc:UPI000294FFFB
UniProt:M0T0B5	MapMan:15.5.12	:	:	:	:

Description

Putative Scarecrow-like protein 6 [Source:GMGC_GENE;Acc:GSMUA_Achr5G20860_001]

Coordinates

chr5:+:22757917..22760626

Molecular Weight (calculated)

61074.4 Da

IEP (calculated)

7.115

GRAVY (calculated)

-0.048

Length

554 amino acids

Sequence
(BLAST)

001: MRGLPFHDQG KRGLEAVNTI LEGNQALFWV NKRPKLIIPE VVEPRSVLDH RSPSSPTSTA TLSSSLGSGS SCDTAVVAAV SGNSANKCSL SDSRRGERCG
101: LGVEDWEVML SETSAASHGR EQTFLRWIMG DVEDPSAAGL KQQQLQLLLS QGPVDFPGNN GNLGFGILDP GMCFPNAMED KPQFFGPELL VNQPLANSSP
201: PFLLNVGQLE HQQLSHLLAT QPKRHRPVVD HQLQKSVVDL LFETAKMVEA CNFVGAHGIL ARLNHQLPSP LGKPLIRSAF YFKEALQLIL SNSAYKVFSE
301: VSPIIQFSNF TCTQALLEEL GGSDRIHIID FDIGFGGQWS SFMQELALRR CSAAGPVRLL KITAFVPYRS QNNLDLCLVR DNLSHFASNV NIPLEFSVHS
401: LDSFDPLKLL GAGGEAIAVN LPVGSVNLSF TALLRVVRQL SPRIVVSVDQ GCNRSDLPFL QHFIHAFQSS MALMESIDAS VLGRHRAADK MLPWRMHYTT
501: TGFVPMQFSD FTETQAECLL KRVQVRGFHV EKCQASLCLY WQHKELVSVS AWRC

Best Arabidopsis Sequence Match ( AT2G45160.1 )
(BLAST)

001: MPLSFERFQG EGVFGLSSSS FYSDSQKIWS NQDKTEAKQE DLGYVVGGFL PEPTSVLDAL RSPSPLASYS STTTTLSSSH GGGGTTVTNT TVTAGDDNNN
101: NKCSQMGLDD LDGVLSASSP GQEQSILRLI MDPGSAFGVF DPGFGFGSGS GPVSAPVSDN SNLLCNFPFQ EITNPAEALI NPSNHCLFYN PPLSPPAKRF
201: NSGSLHQPVF PLSDPDPGHD PVRRQHQFQF PFYHNNQQQQ FPSSSSSTAV AMVPVPSPGM AGDDQSVIIE QLFNAAELIG TTGNNNGDHT VLAQGILARL
301: NHHLNTSSNH KSPFQRAASH IAEALLSLIH NESSPPLITP ENLILRIAAY RSFSETSPFL QFVNFTANQS ILESCNESGF DRIHIIDFDV GYGGQWSSLM
401: QELASGVGGR RRNRASSLKL TVFAPPPSTV SDEFELRFTE ENLKTFAGEV KIPFEIELLS VELLLNPAYW PLSLRSSEKE AIAVNLPVNS VASGYLPLIL
501: RFLKQLSPNI VVCSDRGCDR NDAPFPNAVI HSLQYHTSLL ESLDANQNQD DSSIERFWVQ PSIEKLLMKR HRWIERSPPW RILFTQCGFS PASLSQMAEA
601: QAECLLQRNP VRGFHVEKRQ SSLVMCWQRK ELVTVSAWKC

Arabidopsis Description

SCL27Scarecrow-like protein 27 [Source:UniProtKB/Swiss-Prot;Acc:Q7XJM8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.