Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
Os03t0809300-01 | |
Os05t0180600-02 | |
Os07t0264800-01 | |
Os08t0307400-02 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT3G60630.1 | Os07t0264800-01 | AT1G72030.1 | 21798944 |
AT4G00150.1 | Os05t0180600-02 | AT1G60490.1 | 21798944 |
AT4G00150.1 | Os08t0307400-02 | AT1G60490.1 | 21798944 |
AT4G00150.1 | Os03t0809300-01 | AT5G66720.1 | 21798944 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Zm00001d022034_P001 | Maize | cytosol | 35.02 | 81.37 |
EES11245 | Sorghum | cytosol, nucleus, peroxisome | 79.47 | 78.47 |
Zm00001d002718_P001 | Maize | cytosol | 79.18 | 78.09 |
Zm00001d026158_P001 | Maize | cytosol | 76.79 | 76.04 |
Os02t0663100-01 | Rice | cytosol | 70.46 | 70.07 |
Os02t0662700-01 | Rice | cytosol | 68.5 | 68.69 |
Os10t0551200-01 | Rice | cytosol | 28.97 | 51.76 |
GSMUA_Achr11P... | Banana | cytosol | 41.49 | 49.58 |
GSMUA_Achr5P20860_001 | Banana | cytosol | 36.01 | 46.21 |
Os03t0103400-01 | Rice | cytosol | 29.96 | 44.94 |
Os06t0105350-00 | Rice | plastid | 30.52 | 44.38 |
GSMUA_Achr8P11160_001 | Banana | cytosol | 40.51 | 43.18 |
VIT_02s0154g00400.t01 | Wine grape | cytosol | 29.82 | 41.41 |
GSMUA_Achr11P... | Banana | cytosol | 40.23 | 41.33 |
AT4G00150.1 | Thale cress | cytosol, plastid | 30.38 | 38.71 |
Solyc08g078800.1.1 | Tomato | plastid | 25.18 | 37.76 |
Bra014479.1-P | Field mustard | cytosol, peroxisome, plastid | 9.28 | 36.26 |
CDY63062 | Canola | cytosol, plastid | 28.55 | 36.12 |
CDY63061 | Canola | cytosol, plastid | 28.55 | 36.12 |
Bra037319.1-P | Field mustard | cytosol, plastid | 28.55 | 36.12 |
VIT_15s0048g00270.t01 | Wine grape | extracellular, golgi, mitochondrion, nucleus | 38.82 | 35.61 |
CDX95633 | Canola | cytosol | 27.0 | 34.66 |
Bra003311.1-P | Field mustard | nucleus | 24.19 | 33.99 |
CDX83398 | Canola | cytosol | 28.13 | 33.9 |
CDY67934 | Canola | cytosol | 28.41 | 33.78 |
KRG88927 | Soybean | cytosol | 35.16 | 33.56 |
Solyc01g090950.2.1 | Tomato | cytosol | 36.01 | 33.29 |
KRH75351 | Soybean | cytosol | 34.74 | 33.2 |
CDY56248 | Canola | cytosol | 27.99 | 33.11 |
PGSC0003DMT400066799 | Potato | cytosol, nucleus, vacuole | 35.72 | 33.07 |
Bra000375.1-P | Field mustard | cytosol | 28.13 | 32.95 |
AT2G45160.1 | Thale cress | cytosol | 29.54 | 32.81 |
CDY48367 | Canola | cytosol | 25.74 | 32.45 |
CDX89065 | Canola | nucleus | 24.89 | 32.18 |
PGSC0003DMT400012104 | Potato | plastid | 31.5 | 32.0 |
KRH76167 | Soybean | cytosol | 32.35 | 31.21 |
AT3G60630.1 | Thale cress | cytosol | 27.0 | 30.82 |
KRH65380 | Soybean | cytosol | 31.36 | 30.46 |
Os11t0160550-00 | Rice | cytosol | 15.89 | 24.51 |
Os03t0263300-01 | Rice | cytosol | 15.47 | 19.13 |
Os12t0162700-00 | Rice | nucleus | 7.88 | 15.18 |
Os11t0160600-01 | Rice | cytosol | 0.28 | 4.0 |
Protein Annotations
MapMan:15.5.12 | EntrezGene:4336617 | ProteinID:BAF15428.1 | ProteinID:BAS90418.1 | ProteinID:CAD41636.2 | ProteinID:CAE01700.2 |
GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 |
GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0030154 | GO:GO:0043565 |
InterPro:IPR005202 | EnsemblPlantsGene:Os04g0555000 | EnsemblPlants:Os04t0555000-01 | PFAM:PF03514 | PFscan:PS50985 | PANTHER:PTHR31636 |
PANTHER:PTHR31636:SF64 | UniProt:Q7XT28 | InterPro:TF_GRAS | UniParc:UPI00001B0D47 | RefSeq:XP_015637143.1 | SEG:seg |
Description
hairy meristem 3GRAS transcription factor domain containing protein. (Os04t0555000-01)
Coordinates
chr4:+:27764668..27767324
Molecular Weight (calculated)
74011.9 Da
IEP (calculated)
5.849
GRAVY (calculated)
0.004
Length
711 amino acids
Sequence
(BLAST)
(BLAST)
001: MRAAPFSADG NGAAELAGSI AALLWPEDKG GGGGGGGGSL LVEPRSVLDC RGSPSPPNST STLSSSHGSG AADSISTGVA AVSESSAAAA EATRWAAPGE
101: HGGGGGGELP PIPGALDVGF VAEESWDAML GDAAAAAGQE QTFLNWIMAA PGDMEPQAPG LSQQQLLANA AGFGFPLQHH PGGVSSPAAL ASDLSSSGGR
201: SLTSSSGSNS KATSAFGLLS PEAALQPPPA TTAPFHNGAD MKPPLLGLPS PTLLLNQHQP TPASTLFMPF PSFSDHQQQP LLQPPPKRHH SVPDNLFLLH
301: NQPQPPPPAP AQCLPFPTLH SAVPFQLQPS MQHPRNAMKS TAAAAAAQQQ HLLDELAAAA KATEVGNSIG AREILARLNQ QLPPIGKPFL RSASYLKDAL
401: LLALADGHHA ATRLTSPLDV ALKLTAYKSF SDLSPVLQFA NFTVTQALLD EIASTTASCI RVIDFDLGVG GQWASFLQEL AHRCGSGGVS LPMLKLTAFV
501: SAASHHPLEL HLTQDNLSQF AADLGIPFEF NAINLDAFDP MELIAPTADE VVAVSLPVGC SARTPLPAML QLVKQLAPKI VVAIDYGSDR SDLPFSQHFL
601: NCLQSCLCLL ESLDAAGTDA DAVSKIERFL IQPRVEDAVL GRRRADKAIA WRTVLTSAGF APQPLSNLAE AQADCLLKRV QVRGFHVEKR GAGLALYWQR
701: GELVSVSAWR C
101: HGGGGGGELP PIPGALDVGF VAEESWDAML GDAAAAAGQE QTFLNWIMAA PGDMEPQAPG LSQQQLLANA AGFGFPLQHH PGGVSSPAAL ASDLSSSGGR
201: SLTSSSGSNS KATSAFGLLS PEAALQPPPA TTAPFHNGAD MKPPLLGLPS PTLLLNQHQP TPASTLFMPF PSFSDHQQQP LLQPPPKRHH SVPDNLFLLH
301: NQPQPPPPAP AQCLPFPTLH SAVPFQLQPS MQHPRNAMKS TAAAAAAQQQ HLLDELAAAA KATEVGNSIG AREILARLNQ QLPPIGKPFL RSASYLKDAL
401: LLALADGHHA ATRLTSPLDV ALKLTAYKSF SDLSPVLQFA NFTVTQALLD EIASTTASCI RVIDFDLGVG GQWASFLQEL AHRCGSGGVS LPMLKLTAFV
501: SAASHHPLEL HLTQDNLSQF AADLGIPFEF NAINLDAFDP MELIAPTADE VVAVSLPVGC SARTPLPAML QLVKQLAPKI VVAIDYGSDR SDLPFSQHFL
601: NCLQSCLCLL ESLDAAGTDA DAVSKIERFL IQPRVEDAVL GRRRADKAIA WRTVLTSAGF APQPLSNLAE AQADCLLKRV QVRGFHVEKR GAGLALYWQR
701: GELVSVSAWR C
001: MPLPFEEFQG KGISCFSSFS SSFPQPPSSP LLSHRKARGG EEEEEEVPAA EPTSVLDSLI SPTSSSTVSS SHGGNSAVGG GGDATTDEQC GAIGLGDWEE
101: QVPHDHEQSI LGLIMGDSTD PSLELNSILQ TSPTFHDSDY SSPGFGVVDT GFGLDHHSVP PSHVSGLLIN QSQTHYTQNP AAIFYGHHHH TPPPAKRLNP
201: GPVGITEQLV KAAEVIESDT CLAQGILARL NQQLSSPVGK PLERAAFYFK EALNNLLHNV SQTLNPYSLI FKIAAYKSFS EISPVLQFAN FTSNQALLES
301: FHGFHRLHII DFDIGYGGQW ASLMQELVLR DNAAPLSLKI TVFASPANHD QLELGFTQDN LKHFASEINI SLDIQVLSLD LLGSISWPNS SEKEAVAVNI
401: SAASFSHLPL VLRFVKHLSP TIIVCSDRGC ERTDLPFSQQ LAHSLHSHTA LFESLDAVNA NLDAMQKIER FLIQPEIEKL VLDRSRPIER PMMTWQAMFL
501: QMGFSPVTHS NFTESQAECL VQRTPVRGFH VEKKHNSLLL CWQRTELVGV SAWRCRSS
101: QVPHDHEQSI LGLIMGDSTD PSLELNSILQ TSPTFHDSDY SSPGFGVVDT GFGLDHHSVP PSHVSGLLIN QSQTHYTQNP AAIFYGHHHH TPPPAKRLNP
201: GPVGITEQLV KAAEVIESDT CLAQGILARL NQQLSSPVGK PLERAAFYFK EALNNLLHNV SQTLNPYSLI FKIAAYKSFS EISPVLQFAN FTSNQALLES
301: FHGFHRLHII DFDIGYGGQW ASLMQELVLR DNAAPLSLKI TVFASPANHD QLELGFTQDN LKHFASEINI SLDIQVLSLD LLGSISWPNS SEKEAVAVNI
401: SAASFSHLPL VLRFVKHLSP TIIVCSDRGC ERTDLPFSQQ LAHSLHSHTA LFESLDAVNA NLDAMQKIER FLIQPEIEKL VLDRSRPIER PMMTWQAMFL
501: QMGFSPVTHS NFTESQAECL VQRTPVRGFH VEKKHNSLLL CWQRTELVGV SAWRCRSS
Arabidopsis Description
SCL6Scarecrow-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:O81316]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.