Factsheet for GSMUA_Achr1P26740_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0001g03310.t01	Wine grape	cytosol	53.31	57.55
TraesCS4B01G215700.1	Wheat	cytosol	60.11	56.68
TraesCS4A01G088500.1	Wheat	cytosol	60.11	56.68
TraesCS4D01G216200.1	Wheat	cytosol	59.55	56.15
Zm00001d028526_P001	Maize	cytosol	59.36	55.67
KRH53205	Soybean	cytosol	51.61	55.15
OQU92876	Sorghum	cytosol	57.84	55.04
Os03t0263300-01	Rice	cytosol	59.74	54.96
KRH64716	Soybean	cytosol	51.42	54.18
KRH18776	Soybean	cytosol	47.83	53.6
PGSC0003DMT400031475	Potato	cytosol	49.53	52.82
Solyc11g013150.1.1	Tomato	cytosol	48.58	52.77
HORVU4Hr1G061310.1	Barley	cytosol, mitochondrion, plastid	59.74	52.15
Bra002894.1-P	Field mustard	cytosol	40.64	44.89
CDY45672	Canola	cytosol	40.64	43.97
AT4G08250.1	Thale cress	cytosol	40.08	43.89
CDY17336	Canola	cytosol	40.83	43.29
GSMUA_Achr6P36740_001	Banana	cytosol	19.85	22.01
GSMUA_Achr1P05940_001	Banana	plastid	20.98	21.02
GSMUA_Achr3P29970_001	Banana	cytosol	20.79	20.72
GSMUA_Achr4P03460_001	Banana	cytosol, plastid	20.6	20.41
GSMUA_Achr4P07190_001	Banana	plastid	19.47	19.73
GSMUA_Achr5P20860_001	Banana	cytosol	20.42	19.49
GSMUA_Achr11P...	Banana	cytosol	21.55	19.16
GSMUA_Achr8P11160_001	Banana	cytosol	21.74	17.24
GSMUA_Achr11P...	Banana	cytosol	22.5	17.2

Protein Annotations

EnsemblPlants:GSMUA_Achr1P26740_001	EnsemblPlants:GSMUA_Achr1T26740_001	EnsemblPlantsGene:GSMUA_Achr1G26740_001	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	InterPro:SCL26/NSP2
InterPro:TF_GRAS	PANTHER:PTHR31636	PANTHER:PTHR31636:SF25	PFAM:PF03514	PFscan:PS50985	SEG:seg
UniParc:UPI000295DCAA	UniProt:M0S3D1	MapMan:15.5.12	MapMan:26.9.1.6.2	:	:

Description

Nodulation-signaling pathway 2 protein [Source:GMGC_GENE;Acc:GSMUA_Achr1G26740_001]

Coordinates

chr1:-:22398428..22400017

Molecular Weight (calculated)

56978.4 Da

IEP (calculated)

4.997

GRAVY (calculated)

-0.169

Length

529 amino acids

Sequence
(BLAST)

001: MEVAMEEAVA PSGCSSTTTT MDDDFICAWN DWNPAVDWGS FSSVADDFHE LIESMMCPDV VDSPDGLMSV SQTPSYNSSP SSMATSADTP AEEDVGAGGS
101: HDGDEKGLRL VHLLVAAAEA LAGPHKSPEL ARVILVRLKE LVLQAGAGAG VGGTSIERLT AHFTDALQGL LDGSTSAHCG GRNSFRDGHL LHHTSDVLTA
201: FQLLQDMSPY IKFGHFTANQ AILEETLGER RIHIIDYDIA EGVQWASLLQ ALVSRPGGSP PPHLRITAVT RGGSRAMRET GRLLAAFAAS VGQPFSFSQC
301: RLDADEQFRP AGVKVVKGET LVMNCVLHPT MNNTRSGSAS SVASFLRGAV ELGAKVVTLV EEEEQEQSEE RSFVRRFMGE LHRYSAVWDS LEAGFPMQGK
401: ARGMVERVIL APRIAGAVGR AYRDSKEEET DGRWGKWMAV MGFGRVRISC FNHCQAKLLL GLFNDGYSVE EDGSNKLALG WKSRRLLSAS VWKPPLSPPP
501: PCPPSPIRVG IVTPDGLTAS FEDSDFVSD

Best Arabidopsis Sequence Match ( AT4G08250.1 )
(BLAST)

001: MNYPYEDFLD LFFSTHTDPL ATAASTSSNG YSLNDLDIDW DCDFRDVIES IMGDEGAMME PESEAVPMLH DQEGLCNSAS TGLSVADGVS FGEPKTDESK
101: GLRLVHLLVA AADASTGANK SRELTRVILA RLKDLVSPGD RTNMERLAAH FTNGLSKLLE RDSVLCPQQH RDDVYDQADV ISAFELLQNM SPYVNFGYLT
201: ATQAILEAVK YERRIHIVDY DINEGVQWAS LMQALVSRNT GPSAQHLRIT ALSRATNGKK SVAAVQETGR RLTAFADSIG QPFSYQHCKL DTNAFSTSSL
301: KLVRGEAVVI NCMLHLPRFS HQTPSSVISF LSEAKTLNPK LVTLVHEEVG LMGNQGFLYR FMDLLHQFSA IFDSLEAGLS IANPARGFVE RVFIGPWVAN
401: WLTRITANDA EVESFASWPQ WLETNGFKPL EVSFTNRCQA KLLLSLFNDG FRVEELGQNG LVLGWKSRRL VSASFWASCQ TNQ

Arabidopsis Description

SCL26Scarecrow-like protein 26 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUF5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.