Factsheet for VIT_18s0001g03310.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400031475	Potato	cytosol	72.24	71.37
KRH64716	Soybean	cytosol	72.45	70.72
Solyc11g013150.1.1	Tomato	cytosol	70.2	70.64
KRH53205	Soybean	cytosol	71.22	70.51
KRH18776	Soybean	cytosol	60.0	62.29
AT4G08250.1	Thale cress	cytosol	55.31	56.11
Bra002894.1-P	Field mustard	cytosol	53.27	54.49
CDY45672	Canola	cytosol	53.47	53.58
GSMUA_Achr1P26740_001	Banana	cytosol	57.55	53.31
CDY17336	Canola	cytosol	53.88	52.91
Os03t0263300-01	Rice	cytosol	57.76	49.22
TraesCS4A01G088500.1	Wheat	cytosol	56.33	49.2
TraesCS4B01G215700.1	Wheat	cytosol	56.12	49.02
Zm00001d028526_P001	Maize	cytosol	56.33	48.94
TraesCS4D01G216200.1	Wheat	cytosol	55.92	48.84
OQU92876	Sorghum	cytosol	55.1	48.56
HORVU4Hr1G061310.1	Barley	cytosol, mitochondrion, plastid	55.92	45.21
VIT_04s0044g00620.t01	Wine grape	cytosol	24.29	29.82
VIT_04s0023g01380.t01	Wine grape	plastid	23.88	21.75
VIT_02s0154g00400.t01	Wine grape	cytosol	22.65	21.68
VIT_15s0048g00270.t01	Wine grape	extracellular, golgi, mitochondrion, nucleus	24.69	15.61

Protein Annotations

EntrezGene:100250491	wikigene:100250491	MapMan:15.5.12	MapMan:26.9.1.6.2	EMBL:AM470223	ProteinID:CAN83568
ProteinID:CAN83568.1	ProteinID:CCB45503	ProteinID:CCB45503.1	UniProt:F6H0T4	EMBL:FN595227	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR005202	EntrezGene:LOC100250491
wikigene:LOC100250491	PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF25	InterPro:SCL26/NSP2
InterPro:TF_GRAS	UniParc:UPI00015C7850	ArrayExpress:VIT_18s0001g03310	EnsemblPlantsGene:VIT_18s0001g03310	EnsemblPlants:VIT_18s0001g03310.t01	RefSeq:XP_002284426
RefSeq:XP_002284426.2	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr18:-:3254531..3256064

Molecular Weight (calculated)

53797.7 Da

IEP (calculated)

6.078

GRAVY (calculated)

-0.273

Length

490 amino acids

Sequence
(BLAST)

001: MAMALDNTVD LEFSGYSTTT TTTATTATDR DDHYCNWDDW SPVVDWDALS GEQDDFRDLI ESMMDDSGLN PVRAVEEGCN SASTDTMITD EENNGPDLKG
101: LRLVHLLMAA AEALTGVNKS RDLARVILVR LKELVSPTDG TNMERLAAYF TDALQGLLEG AGAKHMIGNG HHRDDHHHHH HQSDVLAAFQ LLQDMSPYVK
201: FGHFTANQAI LEAVSKERRI HIVDYDIMEG IQWASLMQAL VSRKDGPPAP HLRITALSRG GGGRRSIGTI QETGRRLTAF AASIGQPFSF HQCRLDSDET
301: FRPSALKLVR GEALIINCML HLPHFSYRAP DSVASFLSGG KTLKPKLVTL VEEEVGPTGD GGFVGRFMDS LHHYSAVYDS LEAGFPMQGR ARALVERVFL
401: GPRIAGTLGR IYRGRGGQEG GSWGEWLDGA GFRGVGISFA NHCQAKLLLG LFNDGYRVEE LANNRMVLGW KSRRLLSASV WSASDSDLLN

Best Arabidopsis Sequence Match ( AT4G08250.1 )
(BLAST)

001: MNYPYEDFLD LFFSTHTDPL ATAASTSSNG YSLNDLDIDW DCDFRDVIES IMGDEGAMME PESEAVPMLH DQEGLCNSAS TGLSVADGVS FGEPKTDESK
101: GLRLVHLLVA AADASTGANK SRELTRVILA RLKDLVSPGD RTNMERLAAH FTNGLSKLLE RDSVLCPQQH RDDVYDQADV ISAFELLQNM SPYVNFGYLT
201: ATQAILEAVK YERRIHIVDY DINEGVQWAS LMQALVSRNT GPSAQHLRIT ALSRATNGKK SVAAVQETGR RLTAFADSIG QPFSYQHCKL DTNAFSTSSL
301: KLVRGEAVVI NCMLHLPRFS HQTPSSVISF LSEAKTLNPK LVTLVHEEVG LMGNQGFLYR FMDLLHQFSA IFDSLEAGLS IANPARGFVE RVFIGPWVAN
401: WLTRITANDA EVESFASWPQ WLETNGFKPL EVSFTNRCQA KLLLSLFNDG FRVEELGQNG LVLGWKSRRL VSASFWASCQ TNQ

Arabidopsis Description

SCL26Scarecrow-like protein 26 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUF5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.