CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH53205	Soybean	cytosol	65.25	62.22
KRH64716	Soybean	cytosol	64.41	60.56
VIT_18s0001g03310.t01	Wine grape	cytosol	62.29	60.0
PGSC0003DMT400031475	Potato	cytosol	59.32	56.45
Solyc11g013150.1.1	Tomato	cytosol	58.05	56.26
GSMUA_Achr1P26740_001	Banana	cytosol	53.6	47.83
Bra002894.1-P	Field mustard	cytosol	46.61	45.93
AT4G08250.1	Thale cress	cytosol	46.61	45.55
CDY45672	Canola	cytosol	46.82	45.19
CDY17336	Canola	cytosol	47.25	44.69
TraesCS4A01G088500.1	Wheat	cytosol	52.54	44.21
TraesCS4D01G216200.1	Wheat	cytosol	52.33	44.03
TraesCS4B01G215700.1	Wheat	cytosol	52.33	44.03
Zm00001d028526_P001	Maize	cytosol	50.85	42.55
Os03t0263300-01	Rice	cytosol	51.27	42.09
OQU92876	Sorghum	cytosol	49.58	42.09
HORVU4Hr1G061310.1	Barley	cytosol, mitochondrion, plastid	51.69	40.26
KRH43393	Soybean	cytosol	32.63	31.62
KRH69945	Soybean	plastid	24.15	21.8
KRH28630	Soybean	plastid	23.31	21.32
KRH08304	Soybean	plastid	24.36	21.3
KRH76844	Soybean	plastid	23.09	20.76
KRG88927	Soybean	cytosol	25.42	16.11
KRH75351	Soybean	cytosol	25.21	15.99
KRH65380	Soybean	cytosol	23.73	15.3
KRH76167	Soybean	cytosol	23.52	15.06

Protein Annotations

EntrezGene:100816317	MapMan:15.5.12	MapMan:26.9.1.6.2	EMBL:ACUP02008129	EnsemblPlantsGene:GLYMA_13G081700	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	UniProt:I1LW54	InterPro:IPR005202
EnsemblPlants:KRH18776	ProteinID:KRH18776	ProteinID:KRH18776.1	PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636
PANTHER:PTHR31636:SF25	InterPro:SCL26/NSP2	InterPro:TF_GRAS	UniParc:UPI000233BDC6	SEG:seg	:

Description

hypothetical protein

Coordinates

chr13:-:19079739..19081456

Molecular Weight (calculated)

51430.3 Da

IEP (calculated)

4.862

GRAVY (calculated)

-0.168

Length

472 amino acids

Sequence
(BLAST)

001: MDMLIMDDPD FLDFSDHSIT TTLSSHEDCN KNNNNLWSPL IDWESLNACE NDFQTLIDSV MIDNNDDVLT PEESDQSAAE ESESDSTGGD ERGLRLLHLL
101: MAAAEALSSG TESHDLARAI LVRLNELVSP TQGTNIERLA AHFSHALHSL LNGTASAHTP PIDTLTAFQL LQDMSPYIKF AHFTANQAIL EAVAHEKRVH
201: IIDYDITEGA QWASLIQALS SAGPPGPHLR ITALSRGGGG GGNSSSASGQ RSTASVQETG RRLTAFAASV GQPFSFHHSR LDPDETFRPS NLKLVRGEAL
301: VFNCMLHLPH LNFRASGSVG SFLRGAKELN SRLVVLVEEE MGCVAADSGF VGFFMDSLHH YSAVFDSLEV GFPMQTWARA LVEKVFLGPR ITGSVARMYG
401: SGTEEEKVSW GEWLGAAGFR GVPLSFANHC QANLLLGLFN DGYRVEELEN NRLVLGWKSR RLLSASVWSS NS

Best Arabidopsis Sequence Match ( AT4G08250.1 )
(BLAST)

001: MNYPYEDFLD LFFSTHTDPL ATAASTSSNG YSLNDLDIDW DCDFRDVIES IMGDEGAMME PESEAVPMLH DQEGLCNSAS TGLSVADGVS FGEPKTDESK
101: GLRLVHLLVA AADASTGANK SRELTRVILA RLKDLVSPGD RTNMERLAAH FTNGLSKLLE RDSVLCPQQH RDDVYDQADV ISAFELLQNM SPYVNFGYLT
201: ATQAILEAVK YERRIHIVDY DINEGVQWAS LMQALVSRNT GPSAQHLRIT ALSRATNGKK SVAAVQETGR RLTAFADSIG QPFSYQHCKL DTNAFSTSSL
301: KLVRGEAVVI NCMLHLPRFS HQTPSSVISF LSEAKTLNPK LVTLVHEEVG LMGNQGFLYR FMDLLHQFSA IFDSLEAGLS IANPARGFVE RVFIGPWVAN
401: WLTRITANDA EVESFASWPQ WLETNGFKPL EVSFTNRCQA KLLLSLFNDG FRVEELGQNG LVLGWKSRRL VSASFWASCQ TNQ

Arabidopsis Description

SCL26Scarecrow-like protein 26 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUF5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.