Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G088500.1 | Wheat | cytosol | 98.75 | 98.75 |
| TraesCS4B01G215700.1 | Wheat | cytosol | 98.57 | 98.57 |
| HORVU4Hr1G061310.1 | Barley | cytosol, mitochondrion, plastid | 97.33 | 90.1 |
| Os03t0263300-01 | Rice | cytosol | 83.42 | 81.39 |
| OQU92876 | Sorghum | cytosol | 79.14 | 79.86 |
| Zm00001d028526_P001 | Maize | cytosol | 79.86 | 79.43 |
| GSMUA_Achr1P26740_001 | Banana | cytosol | 56.15 | 59.55 |
| VIT_18s0001g03310.t01 | Wine grape | cytosol | 48.84 | 55.92 |
| KRH53205 | Soybean | cytosol | 48.31 | 54.75 |
| PGSC0003DMT400031475 | Potato | cytosol | 47.77 | 54.03 |
| KRH64716 | Soybean | cytosol | 47.59 | 53.19 |
| Solyc11g013150.1.1 | Tomato | cytosol | 45.99 | 52.98 |
| KRH18776 | Soybean | cytosol | 44.03 | 52.33 |
| Bra002894.1-P | Field mustard | cytosol | 38.5 | 45.09 |
| CDY45672 | Canola | cytosol | 38.5 | 44.17 |
| CDY17336 | Canola | cytosol | 38.68 | 43.49 |
| AT4G08250.1 | Thale cress | cytosol | 36.72 | 42.65 |
| TraesCS4D01G110800.1 | Wheat | cytosol | 22.99 | 27.22 |
| TraesCS7D01G011400.1 | Wheat | plastid | 19.43 | 20.49 |
| TraesCS4D01G360200.1 | Wheat | cytosol | 19.43 | 16.98 |
| TraesCS6D01G229400.1 | Wheat | mitochondrion | 21.03 | 16.69 |
| TraesCS1D01G212800.1 | Wheat | cytosol | 18.36 | 16.59 |
Protein Annotations
| EnsemblPlants:TraesCS4D01G216200.1 | EnsemblPlantsGene:TraesCS4D01G216200 | InterPro:IPR005202 | InterPro:SCL26/NSP2 | InterPro:TF_GRAS | PANTHER:PTHR31636 |
| PANTHER:PTHR31636:SF25 | PFAM:PF03514 | PFscan:PS50985 | SEG:seg | MapMan:15.5.12 | MapMan:26.9.1.6.2 |
Description
No Description!
Coordinates
chr4D:-:370302168..370303853
Molecular Weight (calculated)
59923.8 Da
IEP (calculated)
5.132
GRAVY (calculated)
-0.160
Length
561 amino acids
Sequence
(BLAST)
(BLAST)
001: MDVTMEDVVG DLEISGYSSI STSPSSSLDD GMGLYGWNAL SPVADWGLFC SDDGGHDLHG LIESMLCDDA LIGKPDEHPT MFTDGPCYSN ASDPSSTTTT
101: NPGTPVQHDD TPDCNPEKGL RLLHLLMAAA EALSGPHKSR ELARVILVRL KEMVSSTSGN AGASNMERLA AHFTDALQGL LDGSHSVAGT SRQAAMAASH
201: HHSTGDVLTA FQMLQDMSPY MKFGHFTANQ AILEAVAGDR RVHIVDYDLA EGIQWASLMQ AMTSRPDGVS PPHLRITAIT RSGGGGARAV QEAGRRLAAF
301: AGSIGQPFSF GHCRLDSDER FRPATVRMVK GETLVANCIL HQAAATTTVR RPTGSVASFL TGMASLGVKV VTVVEEEGEA EKNEEEASDA AAGGFVGRFM
401: EELHRYSAVW DSLEAGFPTQ SRVRGLVERV ILAPNIAGAV SRAYRGTDGE GRRGWGEWMR GSGFEMVPLS CFNHSQARLL LGLFNDGYTV EETRPNKIVL
501: GWKARRLLSA SVWAPLPLSV PSSPAEGVCQ PMGMAPASGG FGRTEYDYVD SFLVEPAYAL I
101: NPGTPVQHDD TPDCNPEKGL RLLHLLMAAA EALSGPHKSR ELARVILVRL KEMVSSTSGN AGASNMERLA AHFTDALQGL LDGSHSVAGT SRQAAMAASH
201: HHSTGDVLTA FQMLQDMSPY MKFGHFTANQ AILEAVAGDR RVHIVDYDLA EGIQWASLMQ AMTSRPDGVS PPHLRITAIT RSGGGGARAV QEAGRRLAAF
301: AGSIGQPFSF GHCRLDSDER FRPATVRMVK GETLVANCIL HQAAATTTVR RPTGSVASFL TGMASLGVKV VTVVEEEGEA EKNEEEASDA AAGGFVGRFM
401: EELHRYSAVW DSLEAGFPTQ SRVRGLVERV ILAPNIAGAV SRAYRGTDGE GRRGWGEWMR GSGFEMVPLS CFNHSQARLL LGLFNDGYTV EETRPNKIVL
501: GWKARRLLSA SVWAPLPLSV PSSPAEGVCQ PMGMAPASGG FGRTEYDYVD SFLVEPAYAL I
001: MNYPYEDFLD LFFSTHTDPL ATAASTSSNG YSLNDLDIDW DCDFRDVIES IMGDEGAMME PESEAVPMLH DQEGLCNSAS TGLSVADGVS FGEPKTDESK
101: GLRLVHLLVA AADASTGANK SRELTRVILA RLKDLVSPGD RTNMERLAAH FTNGLSKLLE RDSVLCPQQH RDDVYDQADV ISAFELLQNM SPYVNFGYLT
201: ATQAILEAVK YERRIHIVDY DINEGVQWAS LMQALVSRNT GPSAQHLRIT ALSRATNGKK SVAAVQETGR RLTAFADSIG QPFSYQHCKL DTNAFSTSSL
301: KLVRGEAVVI NCMLHLPRFS HQTPSSVISF LSEAKTLNPK LVTLVHEEVG LMGNQGFLYR FMDLLHQFSA IFDSLEAGLS IANPARGFVE RVFIGPWVAN
401: WLTRITANDA EVESFASWPQ WLETNGFKPL EVSFTNRCQA KLLLSLFNDG FRVEELGQNG LVLGWKSRRL VSASFWASCQ TNQ
101: GLRLVHLLVA AADASTGANK SRELTRVILA RLKDLVSPGD RTNMERLAAH FTNGLSKLLE RDSVLCPQQH RDDVYDQADV ISAFELLQNM SPYVNFGYLT
201: ATQAILEAVK YERRIHIVDY DINEGVQWAS LMQALVSRNT GPSAQHLRIT ALSRATNGKK SVAAVQETGR RLTAFADSIG QPFSYQHCKL DTNAFSTSSL
301: KLVRGEAVVI NCMLHLPRFS HQTPSSVISF LSEAKTLNPK LVTLVHEEVG LMGNQGFLYR FMDLLHQFSA IFDSLEAGLS IANPARGFVE RVFIGPWVAN
401: WLTRITANDA EVESFASWPQ WLETNGFKPL EVSFTNRCQA KLLLSLFNDG FRVEELGQNG LVLGWKSRRL VSASFWASCQ TNQ
Arabidopsis Description
SCL26Scarecrow-like protein 26 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUF5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.