Factsheet for Bra002894.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY45672	Canola	cytosol	98.96	96.93
CDY17336	Canola	cytosol	98.96	94.99
AT4G08250.1	Thale cress	cytosol	76.83	76.19
VIT_18s0001g03310.t01	Wine grape	cytosol	54.49	53.27
KRH53205	Soybean	cytosol	53.24	51.52
KRH64716	Soybean	cytosol	53.24	50.8
PGSC0003DMT400031475	Potato	cytosol	50.94	49.19
Solyc11g013150.1.1	Tomato	cytosol	48.64	47.84
KRH18776	Soybean	cytosol	45.93	46.61
GSMUA_Achr1P26740_001	Banana	cytosol	44.89	40.64
Os03t0263300-01	Rice	cytosol	46.35	38.61
TraesCS4D01G216200.1	Wheat	cytosol	45.09	38.5
TraesCS4B01G215700.1	Wheat	cytosol	45.09	38.5
TraesCS4A01G088500.1	Wheat	cytosol	44.89	38.32
OQU92876	Sorghum	cytosol	43.63	37.59
Zm00001d028526_P001	Maize	cytosol	44.05	37.41
HORVU4Hr1G061310.1	Barley	cytosol, mitochondrion, plastid	45.09	35.64
Bra014479.1-P	Field mustard	cytosol, peroxisome, plastid	8.56	22.53
Bra003311.1-P	Field mustard	nucleus	20.46	19.37
Bra028100.1-P	Field mustard	cytosol	19.21	18.74
Bra037319.1-P	Field mustard	cytosol, plastid	20.25	17.26
Bra000375.1-P	Field mustard	cytosol	19.42	15.32
Bra011700.1-P	Field mustard	cytosol	19.0	13.15

Protein Annotations

EnsemblPlants:Bra002894.1	EnsemblPlants:Bra002894.1-P	EnsemblPlantsGene:Bra002894	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	InterPro:SCL26/NSP2
InterPro:TF_GRAS	PANTHER:PTHR31636	PANTHER:PTHR31636:SF25	PFAM:PF03514	PFscan:PS50985	SEG:seg
UniParc:UPI000254448D	UniProt:M4CFB2	MapMan:15.5.12	MapMan:26.9.1.6.2	:	:

Description

AT4G08250 (E=1e-200) | scarecrow transcription factor family protein

Coordinates

chrA10:-:6908010..6909449

Molecular Weight (calculated)

53193.1 Da

IEP (calculated)

5.885

GRAVY (calculated)

-0.168

Length

479 amino acids

Sequence
(BLAST)

001: MTMNHPYDDF PNLLFSNNTA TATSTSSCVE QHDGIISLDM DWDCDFHDLI ESMMSDKGAT TESPPILPCY HGQEGIFNSS STGLSMADEL DHDVEADESK
101: GLRLVHLLVA AADASIGADK TRELTRVLLA KLKDMTSTND RTNMERLAAH FTNGLSKLHK EANVQRQYGP HQHPDVHDRV DVMLAFPMLQ NMSPYINFGY
201: LTATQAILEA VQYERRIHIV DYDITDGVQW PSLMQALVSR NTGPSAQHLR ITALSRATNG KKSVAAVQEA GRRLTAFAES IGQPFSYHHC RMDSDTFNPS
301: SLKLVRGEAV VINCVLHLPR FSHQPPNSII SFLSEAKTLN PKLVTLVHEE VGLVGNQGFL YRFMDLLHQF SAIFDSLEAG PARGFVERVI FGPWVSGWLT
401: RIAITAEVES FASWPLWLAT NGFKPVEVSF ANRCQAKLLL SLFNDGYGVE ELGQNGLVLG WKSRRLVSAS FWASCESSE

Best Arabidopsis Sequence Match ( AT4G08250.1 )
(BLAST)

001: MNYPYEDFLD LFFSTHTDPL ATAASTSSNG YSLNDLDIDW DCDFRDVIES IMGDEGAMME PESEAVPMLH DQEGLCNSAS TGLSVADGVS FGEPKTDESK
101: GLRLVHLLVA AADASTGANK SRELTRVILA RLKDLVSPGD RTNMERLAAH FTNGLSKLLE RDSVLCPQQH RDDVYDQADV ISAFELLQNM SPYVNFGYLT
201: ATQAILEAVK YERRIHIVDY DINEGVQWAS LMQALVSRNT GPSAQHLRIT ALSRATNGKK SVAAVQETGR RLTAFADSIG QPFSYQHCKL DTNAFSTSSL
301: KLVRGEAVVI NCMLHLPRFS HQTPSSVISF LSEAKTLNPK LVTLVHEEVG LMGNQGFLYR FMDLLHQFSA IFDSLEAGLS IANPARGFVE RVFIGPWVAN
401: WLTRITANDA EVESFASWPQ WLETNGFKPL EVSFTNRCQA KLLLSLFNDG FRVEELGQNG LVLGWKSRRL VSASFWASCQ TNQ

Arabidopsis Description

SCL26Scarecrow-like protein 26 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUF5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.