Factsheet for Zm00001d041919_P001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plastid
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG23028	Sorghum	cytosol	77.44	76.66
Zm00001d053163_P001	Maize	cytosol	46.14	47.99
Os12t0162700-00	Rice	nucleus	29.27	39.02
VIT_04s0044g00620.t01	Wine grape	cytosol	25.81	31.83
KRH43393	Soybean	cytosol	29.27	29.57
Solyc11g005610.1.1	Tomato	cytosol	29.07	29.07
PGSC0003DMT400010158	Potato	cytosol	28.66	28.54
Zm00001d022034_P001	Maize	cytosol	16.26	26.14
Zm00001d028526_P001	Maize	cytosol	28.05	24.47
Zm00001d027292_P001	Maize	peroxisome	21.14	21.62
Zm00001d047957_P001	Maize	cytosol	5.28	20.16
Zm00001d045589_P001	Maize	cytosol	19.92	19.6
Zm00001d035873_P001	Maize	cytosol, plastid	11.18	19.23
Zm00001d018956_P001	Maize	plastid	4.88	16.78
Zm00001d027569_P001	Maize	plastid	10.57	16.61
Zm00001d029855_P001	Maize	mitochondrion	21.54	16.43
Zm00001d051387_P001	Maize	cytosol	21.95	15.25
Zm00001d022162_P001	Maize	cytosol	5.08	15.15
Zm00001d002718_P001	Maize	cytosol	21.95	14.98
Zm00001d026158_P001	Maize	cytosol	21.34	14.62
Zm00001d017513_P001	Maize	cytosol, mitochondrion, nucleus	20.93	14.59
Zm00001d042852_P001	Maize	cytosol	6.91	13.82
Zm00001d002023_P001	Maize	cytosol, mitochondrion, peroxisome, plastid	9.55	13.28
Zm00001d031615_P001	Maize	cytosol	6.71	12.13
Os11t0160600-01	Rice	cytosol	0.41	4.0

Protein Annotations

EnsemblPlants:Zm00001d041919_P001	EnsemblPlants:Zm00001d041919_T001	EnsemblPlantsGene:Zm00001d041919	EntrezGene:103652243	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202
InterPro:TF_GRAS	PANTHER:PTHR31636	PANTHER:PTHR31636:SF61	PFAM:PF03514	PFscan:PS50985	ProteinID:AIB04459.1
ProteinID:ONM34075.1	SEG:seg	UniParc:UPI0002219DBC	UniProt:A0A060D570	MapMan:15.5.12	:

Description

GRAS-transcription factor 5Scarecrow-like protein 26

Coordinates

chr3:-:143639361..143640839

Molecular Weight (calculated)

52617.5 Da

IEP (calculated)

4.992

GRAVY (calculated)

-0.015

Length

492 amino acids

Sequence
(BLAST)

001: MGTMSYPCSP LIPFPTQHED MGSYLLWSPQ AVIPLENGVM CDGDAGSSPD HHQQQDHDEL MNMLLQEANV LLLQDELSSG DPSSDGFDQR LLVGQGNGGL
101: LLGLGVQEEV MEESSLGDLL VAGARAVESR DTISASAILS RIDAIIPGVG VPYNGSCHRA AVDHLARYFA QGLRSRMSGE CRPTADAPAP LGRKWMAADR
201: ILQELSPFAK FAHFTANQAI LEGTADDAAV HVVDLNVGEG AQWASLMSDL ARHGSRRKPF RLTEAVVTAD ADADAHRMAA TARRLSEFAD SLGLPFQYGS
301: LRVRSDEDLH GFATSCCSCS VVVSCDTTDI RSYSSLTKLL AGIVRILRPK LVVTTEEELL RAGRNHPGAA AITFAGFFRE ALQHFGAVLE SLASCFRDAG
401: YGACLGLVER EALGPTIQDA VGQYQCAGSV TGGASLELEG FRAREMSSFS VAQGRMLAGL FSGFGVVHGD GRLALCWKSR PLTSVSVWTP VW

Best Arabidopsis Sequence Match ( AT4G08250.1 )
(BLAST)

001: MNYPYEDFLD LFFSTHTDPL ATAASTSSNG YSLNDLDIDW DCDFRDVIES IMGDEGAMME PESEAVPMLH DQEGLCNSAS TGLSVADGVS FGEPKTDESK
101: GLRLVHLLVA AADASTGANK SRELTRVILA RLKDLVSPGD RTNMERLAAH FTNGLSKLLE RDSVLCPQQH RDDVYDQADV ISAFELLQNM SPYVNFGYLT
201: ATQAILEAVK YERRIHIVDY DINEGVQWAS LMQALVSRNT GPSAQHLRIT ALSRATNGKK SVAAVQETGR RLTAFADSIG QPFSYQHCKL DTNAFSTSSL
301: KLVRGEAVVI NCMLHLPRFS HQTPSSVISF LSEAKTLNPK LVTLVHEEVG LMGNQGFLYR FMDLLHQFSA IFDSLEAGLS IANPARGFVE RVFIGPWVAN
401: WLTRITANDA EVESFASWPQ WLETNGFKPL EVSFTNRCQA KLLLSLFNDG FRVEELGQNG LVLGWKSRRL VSASFWASCQ TNQ

Arabidopsis Description

SCL26Scarecrow-like protein 26 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUF5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.