Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- cytosol 2
- plasma membrane 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc09g015180.2.1 | Tomato | cytosol | 96.49 | 96.49 |
| VIT_08s0058g00530.t01 | Wine grape | cytosol | 53.04 | 54.25 |
| KRH76029 | Soybean | nucleus, plastid | 47.6 | 48.53 |
| KRH65583 | Soybean | plastid | 29.71 | 45.37 |
| Bra029720.1-P | Field mustard | nucleus | 44.41 | 44.13 |
| CDY36008 | Canola | nucleus | 43.77 | 43.63 |
| CDY27973 | Canola | nucleus | 43.45 | 43.17 |
| AT3G08780.1 | Thale cress | cytosol | 42.17 | 42.17 |
| TraesCS5B01G149500.1 | Wheat | cytosol | 33.23 | 36.62 |
| EES07862 | Sorghum | plastid | 32.27 | 35.56 |
| TraesCS5D01G156000.1 | Wheat | cytosol | 31.95 | 35.21 |
| Os04t0479300-01 | Rice | extracellular, nucleus | 30.67 | 35.16 |
| TraesCS5A01G151000.1 | Wheat | cytosol, nucleus, plasma membrane | 31.31 | 34.51 |
| Os07t0540200-01 | Rice | cytosol, nucleus, plasma membrane | 31.63 | 33.9 |
| Zm00001d025308_P001 | Maize | plastid | 16.29 | 32.9 |
| TraesCS2A01G325500.1 | Wheat | plastid | 28.43 | 32.6 |
| KXG22792 | Sorghum | endoplasmic reticulum, peroxisome, plastid | 27.8 | 31.41 |
| Zm00001d044621_P001 | Maize | extracellular | 28.43 | 31.01 |
| TraesCS2B01G356400.1 | Wheat | endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole | 26.52 | 30.29 |
| HORVU2Hr1G082810.2 | Barley | cytosol | 28.11 | 29.43 |
| TraesCS2D01G337200.1 | Wheat | extracellular | 26.52 | 29.33 |
| TraesCS1A01G382300.1 | Wheat | cytosol | 21.09 | 26.83 |
| TraesCS1B01G407600.1 | Wheat | endoplasmic reticulum, plasma membrane | 21.09 | 25.1 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400044093 | EnsemblPlantsGene:PGSC0003DMG400017108 | EntrezGene:102592067 | InterPro:FAM175 | InterPro:FAM175_plant | PANTHER:PTHR31728 |
| PANTHER:PTHR31728:SF1 | PGSC:PGSC0003DMG400017108 | PRINTS:PR02051 | PRINTS:PR02054 | RefSeq:XP_006360829.1 | SEG:seg |
| UniParc:UPI00029608A5 | UniProt:M1BFK9 | MapMan:35.2 | : | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400017108]
Coordinates
chr9:-:11190126..11194890
Molecular Weight (calculated)
34509.8 Da
IEP (calculated)
6.756
GRAVY (calculated)
-0.307
Length
313 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDHPIHKIQ ISGTTLASVL HRFFSSTGDI HGLLFGHVSF STTISLSDDP TSNFSSVTAM NSASSSGADG PTLTATITDF LSIPSHFPLP LQHKHREDPS
101: SVLLGWFSGR RKTPLRPSLK DSTTIISLSS SASHSFTPQN SPYPLSLQPS LFLLLSTPFQ EQLIHTHEYK AFQYRISTDS FDPKSLDVIN IGPSFRSHYG
201: SFSPISPFPS MTCDLRGPNA MAEDEKAETL VGIKRGLKDQ KELDLCAEGF EIGRLSKLMG SDSSNYTAEL EHLYDKMLLK LDSLARSVET SSAKVLEQEK
301: HNMKLRYKIA GLE
101: SVLLGWFSGR RKTPLRPSLK DSTTIISLSS SASHSFTPQN SPYPLSLQPS LFLLLSTPFQ EQLIHTHEYK AFQYRISTDS FDPKSLDVIN IGPSFRSHYG
201: SFSPISPFPS MTCDLRGPNA MAEDEKAETL VGIKRGLKDQ KELDLCAEGF EIGRLSKLMG SDSSNYTAEL EHLYDKMLLK LDSLARSVET SSAKVLEQEK
301: HNMKLRYKIA GLE
001: MDDLSLEKIE ISGPTLASLI QRASSSPSDV DGLIFGQIHR IVSSNLSDDS PADIASSSSS SDQIVATVTS FICSGKTVSF YDPLGRVDSR RIDSLRVDSP
101: DHLIGWFSAR RKTANRPSMR ELAVTSSLSS QFHLPIEDLQ NPRSMNMASS VFFLLTMPLT DQCIHTHEYR AYQFRSSKQR LEPRSVGIVN IGPAFRGHYG
201: SFSPKSGFPP LICELSSSAM SVDCDESSLS AKKQSAKDQK EIDALAEGFQ VGELKRLVGA EAANYTGGIE EMYERMLAKI ESLASDVEKS SARVFQQEKH
301: NRKLRNRVAR IGR
101: DHLIGWFSAR RKTANRPSMR ELAVTSSLSS QFHLPIEDLQ NPRSMNMASS VFFLLTMPLT DQCIHTHEYR AYQFRSSKQR LEPRSVGIVN IGPAFRGHYG
201: SFSPKSGFPP LICELSSSAM SVDCDESSLS AKKQSAKDQK EIDALAEGFQ VGELKRLVGA EAANYTGGIE EMYERMLAKI ESLASDVEKS SARVFQQEKH
301: NRKLRNRVAR IGR
Arabidopsis Description
AT3g08780/F17O14_25 [Source:UniProtKB/TrEMBL;Acc:Q8RY09]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.