Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY36008 | Canola | nucleus | 93.65 | 93.95 |
| AT3G08780.1 | Thale cress | cytosol | 78.73 | 79.23 |
| VIT_08s0058g00530.t01 | Wine grape | cytosol | 49.84 | 51.31 |
| KRH76029 | Soybean | nucleus, plastid | 47.3 | 48.53 |
| KRH65583 | Soybean | plastid | 30.79 | 47.32 |
| PGSC0003DMT400044093 | Potato | cytosol | 43.17 | 43.45 |
| Solyc09g015180.2.1 | Tomato | cytosol | 43.17 | 43.45 |
| TraesCS5D01G156000.1 | Wheat | cytosol | 34.29 | 38.03 |
| TraesCS5B01G149500.1 | Wheat | cytosol | 33.97 | 37.68 |
| TraesCS5A01G151000.1 | Wheat | cytosol, nucleus, plasma membrane | 33.97 | 37.68 |
| Zm00001d025308_P001 | Maize | plastid | 18.1 | 36.77 |
| EES07862 | Sorghum | plastid | 31.75 | 35.21 |
| Os07t0540200-01 | Rice | cytosol, nucleus, plasma membrane | 32.38 | 34.93 |
| Os04t0479300-01 | Rice | extracellular, nucleus | 29.84 | 34.43 |
| KXG22792 | Sorghum | endoplasmic reticulum, peroxisome, plastid | 29.84 | 33.94 |
| Zm00001d044621_P001 | Maize | extracellular | 30.79 | 33.8 |
| TraesCS2A01G325500.1 | Wheat | plastid | 28.57 | 32.97 |
| TraesCS2D01G337200.1 | Wheat | extracellular | 28.57 | 31.8 |
| TraesCS2B01G356400.1 | Wheat | endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole | 26.67 | 30.66 |
| HORVU2Hr1G082810.2 | Barley | cytosol | 28.57 | 30.1 |
| TraesCS1A01G382300.1 | Wheat | cytosol | 22.54 | 28.86 |
| TraesCS1B01G407600.1 | Wheat | endoplasmic reticulum, plasma membrane | 20.63 | 24.71 |
Protein Annotations
| EnsemblPlants:CDY27973 | EnsemblPlantsGene:GSBRNA2T00038896001 | InterPro:FAM175 | InterPro:FAM175_plant | PANTHER:PTHR31728 | PANTHER:PTHR31728:SF1 |
| PRINTS:PR02051 | PRINTS:PR02054 | ProteinID:CDY27973 | ProteinID:CDY27973.1 | SEG:seg | UniParc:UPI0004EE78D2 |
| UniProt:A0A078GTJ9 | MapMan:35.2 | : | : | : | : |
Description
BnaC05g43750DBnaC05g43750D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GTJ9]
Coordinates
chrLK032213:+:48525..50217
Molecular Weight (calculated)
34385.6 Da
IEP (calculated)
6.694
GRAVY (calculated)
-0.361
Length
315 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDLSLERIE IPGPTLASLI QRASSSPGDV DGLLFGQIHR IASTTLSDDS PAEPSASISS SSSSDQIVAT VTSFISSGKT VSFYDPLGRV DSRRIDSLQL
101: GSPDRLLGWF SARRTTANRP SMRELAVASS LSSRFQLPIE NSESPNSMPS SVFILLTTPL TDQLIHTHEY RAYQFRPLNR RLEPRSLGIV NIGPAFRGHY
201: GSFNPKSGFP PLLCEVSSSA MMNEDRDEGS LSGKKQAVKD QKEVDALADG FGVGSLKRLV GAEAASYTGG VEEMYERMLA KVESLASEVD KSSAKVLELD
301: NHNRKLRYRV ARIER
101: GSPDRLLGWF SARRTTANRP SMRELAVASS LSSRFQLPIE NSESPNSMPS SVFILLTTPL TDQLIHTHEY RAYQFRPLNR RLEPRSLGIV NIGPAFRGHY
201: GSFNPKSGFP PLLCEVSSSA MMNEDRDEGS LSGKKQAVKD QKEVDALADG FGVGSLKRLV GAEAASYTGG VEEMYERMLA KVESLASEVD KSSAKVLELD
301: NHNRKLRYRV ARIER
001: MDDLSLEKIE ISGPTLASLI QRASSSPSDV DGLIFGQIHR IVSSNLSDDS PADIASSSSS SDQIVATVTS FICSGKTVSF YDPLGRVDSR RIDSLRVDSP
101: DHLIGWFSAR RKTANRPSMR ELAVTSSLSS QFHLPIEDLQ NPRSMNMASS VFFLLTMPLT DQCIHTHEYR AYQFRSSKQR LEPRSVGIVN IGPAFRGHYG
201: SFSPKSGFPP LICELSSSAM SVDCDESSLS AKKQSAKDQK EIDALAEGFQ VGELKRLVGA EAANYTGGIE EMYERMLAKI ESLASDVEKS SARVFQQEKH
301: NRKLRNRVAR IGR
101: DHLIGWFSAR RKTANRPSMR ELAVTSSLSS QFHLPIEDLQ NPRSMNMASS VFFLLTMPLT DQCIHTHEYR AYQFRSSKQR LEPRSVGIVN IGPAFRGHYG
201: SFSPKSGFPP LICELSSSAM SVDCDESSLS AKKQSAKDQK EIDALAEGFQ VGELKRLVGA EAANYTGGIE EMYERMLAKI ESLASDVEKS SARVFQQEKH
301: NRKLRNRVAR IGR
Arabidopsis Description
AT3g08780/F17O14_25 [Source:UniProtKB/TrEMBL;Acc:Q8RY09]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.