CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG88927
KRH03247
KRH03466
KRH03947
KRH24006
KRH27971
KRH29310
KRH54345
KRH54542
KRH56919
KRH57111
KRH57220
KRH63357
KRH63594
KRH65380
KRH75351
KRH76167
KRH77487

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G08780.1	KRH03466	AT3G47620.1	21798944
AT3G08780.1	KRH54542	AT3G47620.1	21798944
AT3G08780.1	KRH56919	AT3G47620.1	21798944
AT3G08780.1	KRH63357	AT3G47620.1	21798944
AT3G08780.1	KRH24006	AT3G48150.1	21798944
AT3G08780.1	KRH27971	AT3G48150.1	21798944
AT3G08780.1	KRH29310	AT3G48150.1	21798944
AT3G08780.1	KRH77487	AT3G48150.1	21798944
AT3G08780.1	KRH03247	AT3G54170.1	21798944
AT3G08780.1	KRH54345	AT3G54170.1	21798944
AT3G08780.1	KRH57111	AT3G54170.1	21798944
AT3G08780.1	KRH63594	AT3G54170.1	21798944
AT3G08780.1	KRG88927	AT4G00150.1	21798944
AT3G08780.1	KRH65380	AT4G00150.1	21798944
AT3G08780.1	KRH75351	AT4G00150.1	21798944
AT3G08780.1	KRH76167	AT4G00150.1	21798944
AT3G08780.1	KRH03947	AT4G24840.1	21798944
AT3G08780.1	KRH57220	AT4G24840.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH76029	Soybean	nucleus, plastid	83.9	56.03
VIT_08s0058g00530.t01	Wine grape	cytosol	49.76	33.33
CDY36008	Canola	nucleus	48.78	31.85
Bra029720.1-P	Field mustard	nucleus	48.78	31.75
Solyc09g015180.2.1	Tomato	cytosol	47.32	30.99
AT3G08780.1	Thale cress	cytosol	47.32	30.99
CDY27973	Canola	nucleus	47.32	30.79
Zm00001d025308_P001	Maize	plastid	22.93	30.32
PGSC0003DMT400044093	Potato	cytosol	45.37	29.71
Os04t0479300-01	Rice	extracellular, nucleus	30.73	23.08
TraesCS2A01G325500.1	Wheat	plastid	27.32	20.51
TraesCS2D01G337200.1	Wheat	extracellular	28.29	20.49
TraesCS2B01G356400.1	Wheat	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	26.83	20.07
TraesCS5A01G151000.1	Wheat	cytosol, nucleus, plasma membrane	27.8	20.07
EES07862	Sorghum	plastid	27.32	19.72
TraesCS5B01G149500.1	Wheat	cytosol	27.32	19.72
Os07t0540200-01	Rice	cytosol, nucleus, plasma membrane	27.8	19.52
TraesCS5D01G156000.1	Wheat	cytosol	26.83	19.37
HORVU2Hr1G082810.2	Barley	cytosol	27.8	19.06
KXG22792	Sorghum	endoplasmic reticulum, peroxisome, plastid	25.37	18.77
Zm00001d044621_P001	Maize	extracellular	24.88	17.77
TraesCS1A01G382300.1	Wheat	cytosol	20.98	17.48
TraesCS1B01G407600.1	Wheat	endoplasmic reticulum, plasma membrane	21.46	16.73

Protein Annotations

EMBL:ACUP02001402	EnsemblPlants:KRH65583	EnsemblPlantsGene:GLYMA_03G047200	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0031593	InterPro:FAM175
InterPro:FAM175_plant	PANTHER:PTHR31728	PANTHER:PTHR31728:SF1	PRINTS:PR02054	ProteinID:KRH65583	ProteinID:KRH65583.1
SEG:seg	UniParc:UPI0006EDD27E	UniProt:A0A0R0KR12	MapMan:35.2	:	:

Description

hypothetical protein

Coordinates

chr3:+:5993387..5998875

Molecular Weight (calculated)

22768.8 Da

IEP (calculated)

6.676

GRAVY (calculated)

-0.536

Length

205 amino acids

Sequence
(BLAST)

001: MREFSVTSSL SSLSQFSSQI QNPNSISSES SLFPPCIFLL LASPSSSDHH HSHVHTHEYR AFQFRPASLS FEPRSLDVVN IGPAFRGHYG AFAPNSNLPP
101: LDCGPHDSPM ISDGGDETMG KMKQATKDQR ELNQCAEGFE VGRLSRMMGS EAKNYTEGLE ELYQKMLVKI ENLSGLVEKS SAMVIEQENH NRKLKHKILR
201: SAASE

Best Arabidopsis Sequence Match ( AT3G08780.1 )
(BLAST)

001: MDDLSLEKIE ISGPTLASLI QRASSSPSDV DGLIFGQIHR IVSSNLSDDS PADIASSSSS SDQIVATVTS FICSGKTVSF YDPLGRVDSR RIDSLRVDSP
101: DHLIGWFSAR RKTANRPSMR ELAVTSSLSS QFHLPIEDLQ NPRSMNMASS VFFLLTMPLT DQCIHTHEYR AYQFRSSKQR LEPRSVGIVN IGPAFRGHYG
201: SFSPKSGFPP LICELSSSAM SVDCDESSLS AKKQSAKDQK EIDALAEGFQ VGELKRLVGA EAANYTGGIE EMYERMLAKI ESLASDVEKS SARVFQQEKH
301: NRKLRNRVAR IGR

Arabidopsis Description

AT3g08780/F17O14_25 [Source:UniProtKB/TrEMBL;Acc:Q8RY09]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.