CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plastid, peroxisome

Predictor Summary:

nucleus 1
plastid 2
peroxisome 1
extracellular 1
endoplasmic reticulum 2
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, peroxisome, plastid
Any Predictor:	nucleus, peroxisome, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	peroxisome
PProwler:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
EER87695
EER88112
EER91968
EES04471
EES05768
EES07255
EES07517
EES11245
OQU85680
OQU90613

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G08780.1	EER88112	AT3G47620.1	21798944
AT3G08780.1	EES07255	AT3G47620.1	21798944
AT3G08780.1	EES07517	AT3G48150.1	21798944
AT3G08780.1	EES04471	AT3G54170.1	21798944
AT3G08780.1	EER87695	AT4G00150.1	21798944
AT3G08780.1	EER91968	AT4G00150.1	21798944
AT3G08780.1	EES05768	AT4G00150.1	21798944
AT3G08780.1	EES11245	AT4G00150.1	21798944
AT3G08780.1	OQU85680	AT4G00150.1	21798944
AT3G08780.1	OQU90613	AT4G24840.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES07862	Sorghum	plastid	89.53	87.32
Zm00001d025308_P001	Maize	plastid	48.01	85.81
Zm00001d044621_P001	Maize	extracellular	87.0	83.97
Os07t0540200-01	Rice	cytosol, nucleus, plasma membrane	69.31	65.75
TraesCS5B01G149500.1	Wheat	cytosol	67.15	65.49
TraesCS5A01G151000.1	Wheat	cytosol, nucleus, plasma membrane	66.06	64.44
TraesCS5D01G156000.1	Wheat	cytosol	66.06	64.44
KRH76029	Soybean	nucleus, plastid	34.3	30.94
CDY27973	Canola	nucleus	33.94	29.84
CDY36008	Canola	nucleus	33.21	29.3
Bra029720.1-P	Field mustard	nucleus	33.21	29.21
VIT_08s0058g00530.t01	Wine grape	cytosol	32.13	29.09
AT3G08780.1	Thale cress	cytosol	32.49	28.75
PGSC0003DMT400044093	Potato	cytosol	31.41	27.8
Solyc09g015180.2.1	Tomato	cytosol	31.05	27.48
KRH65583	Soybean	plastid	18.77	25.37

Protein Annotations

EnsemblPlants:KXG22792	EnsemblPlantsGene:SORBI_3008G008300	InterPro:FAM175	ncoils:Coil	PANTHER:PTHR31728	PANTHER:PTHR31728:SF1
PRINTS:PR02051	ProteinID:KXG22792	ProteinID:KXG22792.2	SEG:seg	UniParc:UPI000B8BAF53	UniProt:A0A1B6PAR4
MapMan:35.2	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:636520..638667

Molecular Weight (calculated)

28511.0 Da

IEP (calculated)

7.159

GRAVY (calculated)

0.061

Length

277 amino acids

Sequence
(BLAST)

001: MALGDGATAT PPVAKLSISG AALAALLHRC AAAAGDCDGL LFGRAAHLPA PPAALSDYDD AAAAAPPAPA LSISVSGHCS LSHPSSLSDS LGRFHPPSSS
101: SPAPIGFFSS RRRTALRPTM REAALAHSLS ESLASAHPLL LILVSPSASP NHSTHSYDYR AFLLLAGRLV PASLAVVNVG PGFRDQYHAF TAESPMPWLP
201: SAPAPGHAHT IGEQKAVDEM VDGSGVGRLQ GVLGAAAGQA AEMDEMYAGM LRKLEKLARE VEKSNLRVLE QRSLGPV

Best Arabidopsis Sequence Match ( AT3G08780.1 )
(BLAST)

001: MDDLSLEKIE ISGPTLASLI QRASSSPSDV DGLIFGQIHR IVSSNLSDDS PADIASSSSS SDQIVATVTS FICSGKTVSF YDPLGRVDSR RIDSLRVDSP
101: DHLIGWFSAR RKTANRPSMR ELAVTSSLSS QFHLPIEDLQ NPRSMNMASS VFFLLTMPLT DQCIHTHEYR AYQFRSSKQR LEPRSVGIVN IGPAFRGHYG
201: SFSPKSGFPP LICELSSSAM SVDCDESSLS AKKQSAKDQK EIDALAEGFQ VGELKRLVGA EAANYTGGIE EMYERMLAKI ESLASDVEKS SARVFQQEKH
301: NRKLRNRVAR IGR

Arabidopsis Description

AT3g08780/F17O14_25 [Source:UniProtKB/TrEMBL;Acc:Q8RY09]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.