CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER87695
EER88112
EER91968
EES04471
EES05768
EES07255
EES07517
EES11245
OQU85680
OQU90613

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G08780.1	EER88112	AT3G47620.1	21798944
AT3G08780.1	EES07255	AT3G47620.1	21798944
AT3G08780.1	EES07517	AT3G48150.1	21798944
AT3G08780.1	EES04471	AT3G54170.1	21798944
AT3G08780.1	EER87695	AT4G00150.1	21798944
AT3G08780.1	EER91968	AT4G00150.1	21798944
AT3G08780.1	EES05768	AT4G00150.1	21798944
AT3G08780.1	EES11245	AT4G00150.1	21798944
AT3G08780.1	OQU85680	AT4G00150.1	21798944
AT3G08780.1	OQU90613	AT4G24840.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG22792	Sorghum	endoplasmic reticulum, peroxisome, plastid	87.32	89.53
Zm00001d025308_P001	Maize	plastid	45.42	83.23
Zm00001d044621_P001	Maize	extracellular	82.04	81.18
Os07t0540200-01	Rice	cytosol, nucleus, plasma membrane	70.07	68.15
TraesCS5B01G149500.1	Wheat	cytosol	67.25	67.25
TraesCS5D01G156000.1	Wheat	cytosol	65.85	65.85
TraesCS5A01G151000.1	Wheat	cytosol, nucleus, plasma membrane	65.49	65.49
PGSC0003DMT400044093	Potato	cytosol	35.56	32.27
KRH76029	Soybean	nucleus, plastid	34.86	32.25
VIT_08s0058g00530.t01	Wine grape	cytosol	34.51	32.03
Solyc09g015180.2.1	Tomato	cytosol	35.21	31.95
CDY27973	Canola	nucleus	35.21	31.75
CDY36008	Canola	nucleus	34.51	31.21
Bra029720.1-P	Field mustard	nucleus	34.51	31.11
AT3G08780.1	Thale cress	cytosol	33.45	30.35
KRH65583	Soybean	plastid	19.72	27.32

Protein Annotations

MapMan:35.2	EntrezGene:8079981	UniProt:C5Y320	ncoils:Coil	EnsemblPlants:EES07862	ProteinID:EES07862
ProteinID:EES07862.1	InterPro:FAM175	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0031593	ProteinID:OQU82700.1	PRINTS:PR02051
PANTHER:PTHR31728	PANTHER:PTHR31728:SF1	EnsemblPlantsGene:SORBI_3005G007700	unigene:Sbi.21563	UniParc:UPI0001A86055	RefSeq:XP_002448874.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:+:613999..618041

Molecular Weight (calculated)

29641.4 Da

IEP (calculated)

7.716

GRAVY (calculated)

0.017

Length

284 amino acids

Sequence
(BLAST)

001: MALGDSATGT PPPVAKLSIS GAALAALLHR CAAAAGDCDG LLFGRAAHLP APPAALSDYD DAAAPPAPAL SISVSGHCSL SSPSSFSDSL GRFHAPSSSP
101: APIGFFSSRR RTALRPSMRE TALAYSLSES LASAHPLLLI LVSPSASPNH STHSYDYRAF LLLAGRLVPA SLAVVNVGPG FRDQYHAFTA DSPMPWLPSA
201: PAPGHAHTIA EQKAVDEMVD GFGVGRLQGV LGSAAGQAAE MDEMYAGMLR KLGKLAREVE KSNLRVLEQE KRNLVLRYKY AGME

Best Arabidopsis Sequence Match ( AT3G08780.1 )
(BLAST)

001: MDDLSLEKIE ISGPTLASLI QRASSSPSDV DGLIFGQIHR IVSSNLSDDS PADIASSSSS SDQIVATVTS FICSGKTVSF YDPLGRVDSR RIDSLRVDSP
101: DHLIGWFSAR RKTANRPSMR ELAVTSSLSS QFHLPIEDLQ NPRSMNMASS VFFLLTMPLT DQCIHTHEYR AYQFRSSKQR LEPRSVGIVN IGPAFRGHYG
201: SFSPKSGFPP LICELSSSAM SVDCDESSLS AKKQSAKDQK EIDALAEGFQ VGELKRLVGA EAANYTGGIE EMYERMLAKI ESLASDVEKS SARVFQQEKH
301: NRKLRNRVAR IGR

Arabidopsis Description

AT3g08780/F17O14_25 [Source:UniProtKB/TrEMBL;Acc:Q8RY09]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.