CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG88927
KRH03247
KRH03466
KRH03947
KRH24006
KRH27971
KRH29310
KRH54345
KRH54542
KRH56919
KRH57111
KRH57220
KRH63357
KRH63594
KRH65380
KRH75351
KRH76167
KRH77487

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G08780.1	KRH03466	AT3G47620.1	21798944
AT3G08780.1	KRH54542	AT3G47620.1	21798944
AT3G08780.1	KRH56919	AT3G47620.1	21798944
AT3G08780.1	KRH63357	AT3G47620.1	21798944
AT3G08780.1	KRH24006	AT3G48150.1	21798944
AT3G08780.1	KRH27971	AT3G48150.1	21798944
AT3G08780.1	KRH29310	AT3G48150.1	21798944
AT3G08780.1	KRH77487	AT3G48150.1	21798944
AT3G08780.1	KRH03247	AT3G54170.1	21798944
AT3G08780.1	KRH54345	AT3G54170.1	21798944
AT3G08780.1	KRH57111	AT3G54170.1	21798944
AT3G08780.1	KRH63594	AT3G54170.1	21798944
AT3G08780.1	KRG88927	AT4G00150.1	21798944
AT3G08780.1	KRH65380	AT4G00150.1	21798944
AT3G08780.1	KRH75351	AT4G00150.1	21798944
AT3G08780.1	KRH76167	AT4G00150.1	21798944
AT3G08780.1	KRH03947	AT4G24840.1	21798944
AT3G08780.1	KRH57220	AT4G24840.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH65583	Soybean	plastid	56.03	83.9
VIT_08s0058g00530.t01	Wine grape	cytosol	54.4	54.58
CDY36008	Canola	nucleus	49.84	48.73
Bra029720.1-P	Field mustard	nucleus	49.84	48.57
Solyc09g015180.2.1	Tomato	cytosol	48.86	47.92
PGSC0003DMT400044093	Potato	cytosol	48.53	47.6
CDY27973	Canola	nucleus	48.53	47.3
AT3G08780.1	Thale cress	cytosol	47.88	46.96
Os04t0479300-01	Rice	extracellular, nucleus	32.25	36.26
EES07862	Sorghum	plastid	32.25	34.86
KXG22792	Sorghum	endoplasmic reticulum, peroxisome, plastid	30.94	34.3
Zm00001d044621_P001	Maize	extracellular	31.6	33.8
TraesCS5A01G151000.1	Wheat	cytosol, nucleus, plasma membrane	30.94	33.45
TraesCS5B01G149500.1	Wheat	cytosol	30.62	33.1
TraesCS5D01G156000.1	Wheat	cytosol	30.62	33.1
Os07t0540200-01	Rice	cytosol, nucleus, plasma membrane	31.27	32.88
TraesCS2A01G325500.1	Wheat	plastid	28.99	32.6
TraesCS2D01G337200.1	Wheat	extracellular	29.97	32.51
Zm00001d025308_P001	Maize	plastid	16.29	32.26
TraesCS2B01G356400.1	Wheat	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	28.34	31.75
HORVU2Hr1G082810.2	Barley	cytosol	29.64	30.43
TraesCS1A01G382300.1	Wheat	cytosol	23.13	28.86
TraesCS1B01G407600.1	Wheat	endoplasmic reticulum, plasma membrane	22.15	25.86

Protein Annotations

EntrezGene:100798241	MapMan:35.2	EMBL:ACUP02000549	InterPro:FAM175	InterPro:FAM175_plant	EnsemblPlantsGene:GLYMA_01G125600
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0031593	UniProt:I1J7I2	ProteinID:KRH76028.1	EnsemblPlants:KRH76029	ProteinID:KRH76029
ProteinID:KRH76029.1	PRINTS:PR02051	PRINTS:PR02054	PANTHER:PTHR31728	PANTHER:PTHR31728:SF1	UniParc:UPI0002336E9E
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:43431913..43439453

Molecular Weight (calculated)

33410.8 Da

IEP (calculated)

6.958

GRAVY (calculated)

-0.300

Length

307 amino acids

Sequence
(BLAST)

001: MEDPPLQKIA ISGPTLASLI QRFSTSPSSI HGLLFGHVTP LPLTLSDDDT SSAATPTPTL LATVTGFLTS PSFHDSSGTV LPSSLPNSPL LGWFSARRRS
101: PLRPSMREFS VTASLSSLTQ FSSQIQNPNS EPSLFPPCIF LLLASPSSDN HHSHVHTHEY RAFQFRPAAL SFEPRSLDVV NIGPAFRGHY GAFSPNSNLP
201: PLDCGPHGSP MMMSEGGDEV LGKMKQAAKD QRELDKCAEG FEIGRLSRMM GSEARSCTEG LEELYQKMLV KIENLTGLVE KSSAMVLEQE NHNRKLKHKI
301: LRSAASE

Best Arabidopsis Sequence Match ( AT3G08780.1 )
(BLAST)

001: MDDLSLEKIE ISGPTLASLI QRASSSPSDV DGLIFGQIHR IVSSNLSDDS PADIASSSSS SDQIVATVTS FICSGKTVSF YDPLGRVDSR RIDSLRVDSP
101: DHLIGWFSAR RKTANRPSMR ELAVTSSLSS QFHLPIEDLQ NPRSMNMASS VFFLLTMPLT DQCIHTHEYR AYQFRSSKQR LEPRSVGIVN IGPAFRGHYG
201: SFSPKSGFPP LICELSSSAM SVDCDESSLS AKKQSAKDQK EIDALAEGFQ VGELKRLVGA EAANYTGGIE EMYERMLAKI ESLASDVEKS SARVFQQEKH
301: NRKLRNRVAR IGR

Arabidopsis Description

AT3g08780/F17O14_25 [Source:UniProtKB/TrEMBL;Acc:Q8RY09]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.