Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra003173.1-P | Field mustard | nucleus | 97.77 | 98.21 |
| CDY51583 | Canola | nucleus | 91.07 | 90.27 |
| CDX73501 | Canola | nucleus | 45.54 | 31.58 |
| CDX78214 | Canola | nucleus | 44.64 | 30.86 |
| AT3G54170.1 | Thale cress | nucleus | 45.09 | 30.61 |
| CDX67592 | Canola | nucleus | 46.88 | 30.52 |
| CDY07554 | Canola | nucleus | 46.88 | 30.43 |
| PGSC0003DMT400046635 | Potato | nucleus | 44.2 | 28.95 |
| Solyc03g112520.2.1 | Tomato | nucleus | 43.75 | 28.66 |
| VIT_17s0000g08940.t01 | Wine grape | nucleus | 42.41 | 27.62 |
| GSMUA_Achr6P08880_001 | Banana | nucleus | 41.52 | 26.35 |
| KRH57111 | Soybean | nucleus | 39.73 | 26.25 |
| KRH03247 | Soybean | nucleus | 40.18 | 26.24 |
| TraesCS7B01G132800.1 | Wheat | nucleus | 41.07 | 25.92 |
| Os06t0474200-01 | Rice | nucleus | 40.18 | 25.57 |
| TraesCS7D01G234600.1 | Wheat | nucleus | 40.18 | 25.57 |
| TraesCS7A01G234600.1 | Wheat | nucleus | 40.18 | 25.57 |
| KRH63594 | Soybean | nucleus | 37.95 | 24.01 |
| KRH54345 | Soybean | nucleus | 36.61 | 23.91 |
| EES04471 | Sorghum | nucleus | 36.61 | 22.22 |
| Zm00001d015194_P001 | Maize | nucleus | 35.71 | 21.62 |
| HORVU7Hr1G048110.2 | Barley | plastid | 39.29 | 19.38 |
Protein Annotations
| EnsemblPlants:CDX67590 | EnsemblPlantsGene:GSBRNA2T00098734001 | ncoils:Coil | ProteinID:CDX67590 | ProteinID:CDX67590.1 | SEG:seg |
| UniParc:UPI0004EEA55E | MapMan:35.1 | : | : | : | : |
Description
BnaA07g16300D
Coordinates
chrLK031787:+:1111210..1112947
Molecular Weight (calculated)
25115.5 Da
IEP (calculated)
4.555
GRAVY (calculated)
-0.717
Length
224 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGGDYSASG RTKRSFEDDE IDNSVSKKRC TCTKVDEEAA MIVSLTESLQ SCKDELASCQ SELESAKAEI DKWNSAFKKE SFVPSRKSPE PQFVIDYIQT
101: LRSSEKSLKE ELEIAQMKLA IRDLKSQLKP ESMKIDEDPE VDGEQQGSTP AGTSRIAYLE DELRAANMVI AELREVQAVR VDALEKTQAT HAKEFEYLKN
201: NMLALQQSRR LVLTPAPENA DAQK
101: LRSSEKSLKE ELEIAQMKLA IRDLKSQLKP ESMKIDEDPE VDGEQQGSTP AGTSRIAYLE DELRAANMVI AELREVQAVR VDALEKTQAT HAKEFEYLKN
201: NMLALQQSRR LVLTPAPENA DAQK
001: MEFSSQDDDF GGDDSAANAT RASGNRRSFG DLEDDEDDIF GSTTVAPGVR TGMILSLRGS LKNCKDDLAS CQNELESAKT EIQKWKSAFQ NESFVPAGKS
101: PEPRFLIDYI QNLKSSEKSL KEQLEIAKRK EASCIVQYAK REQEMAELKS AVRDLKSQLK PASMQARRLL LDPAIHEEFS RLKNLVEEKD KKIKELQDNI
201: AAVTFTPQSK NGKMLMAKCR TLQEENEEIG HQAAEGKIHE LAIKLAMQKS QNAELRSQFE GLYKHMEELT NDVERSNETV IILQEKLEEK EKEIERVKKG
301: LEIVSELVGD KKDEVDEIDE DAKEEIAGGE
101: PEPRFLIDYI QNLKSSEKSL KEQLEIAKRK EASCIVQYAK REQEMAELKS AVRDLKSQLK PASMQARRLL LDPAIHEEFS RLKNLVEEKD KKIKELQDNI
201: AAVTFTPQSK NGKMLMAKCR TLQEENEEIG HQAAEGKIHE LAIKLAMQKS QNAELRSQFE GLYKHMEELT NDVERSNETV IILQEKLEEK EKEIERVKKG
301: LEIVSELVGD KKDEVDEIDE DAKEEIAGGE
Arabidopsis Description
FIP37FIP37 [Source:UniProtKB/TrEMBL;Acc:A0A178V9T4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.