Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX67592 | Canola | nucleus | 93.04 | 93.31 |
| CDX73501 | Canola | nucleus | 77.68 | 82.97 |
| CDX78214 | Canola | nucleus | 77.1 | 82.1 |
| AT3G54170.1 | Thale cress | nucleus | 78.26 | 81.82 |
| Bra003174.1-P | Field mustard | endoplasmic reticulum, nucleus | 68.41 | 79.46 |
| VIT_17s0000g08940.t01 | Wine grape | nucleus | 65.51 | 65.7 |
| KRH57111 | Soybean | nucleus | 62.9 | 64.01 |
| PGSC0003DMT400046635 | Potato | nucleus | 62.9 | 63.45 |
| KRH03247 | Soybean | nucleus | 62.9 | 63.27 |
| Solyc03g112520.2.1 | Tomato | nucleus | 62.03 | 62.57 |
| TraesCS7D01G234600.1 | Wheat | nucleus | 60.58 | 59.38 |
| TraesCS7A01G234600.1 | Wheat | nucleus | 60.58 | 59.38 |
| GSMUA_Achr6P08880_001 | Banana | nucleus | 60.58 | 59.21 |
| TraesCS7B01G132800.1 | Wheat | nucleus | 60.87 | 59.15 |
| Os06t0474200-01 | Rice | nucleus | 60.0 | 58.81 |
| KRH54345 | Soybean | nucleus | 58.26 | 58.6 |
| KRH63594 | Soybean | nucleus | 58.84 | 57.34 |
| EES04471 | Sorghum | nucleus | 53.33 | 49.86 |
| Zm00001d015194_P001 | Maize | nucleus | 53.33 | 49.73 |
| CDX67590 | Canola | nucleus | 30.43 | 46.88 |
| HORVU7Hr1G048110.2 | Barley | plastid | 59.71 | 45.37 |
| CDY51583 | Canola | nucleus | 29.57 | 45.13 |
Protein Annotations
| MapMan:16.5.1.1.3 | GO:A0A078F3K5 | UniProt:A0A078F3K5 | EnsemblPlants:CDY07554 | ProteinID:CDY07554 | ProteinID:CDY07554.1 |
| ncoils:Coil | GO:GO:0000381 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0048024 | GO:GO:0080009 |
| EnsemblPlantsGene:GSBRNA2T00124618001 | PFAM:PF17098 | PANTHER:PTHR15217 | UniParc:UPI0004EEAB7E | InterPro:WTAP | InterPro:WTAP/Mum2 |
| SEG:seg | : | : | : | : | : |
Description
BnaC06g15100DBnaC06g15100D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F3K5]
Coordinates
chrLK031979:-:560239..563120
Molecular Weight (calculated)
39150.1 Da
IEP (calculated)
4.857
GRAVY (calculated)
-0.829
Length
345 amino acids
Sequence
(BLAST)
(BLAST)
001: MEFSSQDDDF GGDFSAANAS RAASGSKRSF GDLEDDEDDD IFGSKKGRTK AEEAAPGVAT AMILSLRESL QNCKDDLASS QNELESATAE ILKWKSAFQN
101: ESFIPAGKSP EPRFLIDYIQ NLKSSERSLK EQLEIAKRKE ASYIVQYAKR EQEMAELKSA VRDLKSQLKP ASMQARRLLL DPAIHEEFSR LKNLVEEKDK
201: KVKELQDSLT AFTFTPLSLK GKMLMEKCKT LQEENEEIGH QAAEGKIHEL AMKLSMQKSQ NAELRKQFEG LYKHMEELTN DVERSNETVI ILQDKLEEKD
301: KELERVKKGM EVVVSDVAEK KDDGEDKDPK YSALQKTFNS IQFER
101: ESFIPAGKSP EPRFLIDYIQ NLKSSERSLK EQLEIAKRKE ASYIVQYAKR EQEMAELKSA VRDLKSQLKP ASMQARRLLL DPAIHEEFSR LKNLVEEKDK
201: KVKELQDSLT AFTFTPLSLK GKMLMEKCKT LQEENEEIGH QAAEGKIHEL AMKLSMQKSQ NAELRKQFEG LYKHMEELTN DVERSNETVI ILQDKLEEKD
301: KELERVKKGM EVVVSDVAEK KDDGEDKDPK YSALQKTFNS IQFER
001: MEFSSQDDDF GGDDSAANAT RASGNRRSFG DLEDDEDDIF GSTTVAPGVR TGMILSLRGS LKNCKDDLAS CQNELESAKT EIQKWKSAFQ NESFVPAGKS
101: PEPRFLIDYI QNLKSSEKSL KEQLEIAKRK EASCIVQYAK REQEMAELKS AVRDLKSQLK PASMQARRLL LDPAIHEEFS RLKNLVEEKD KKIKELQDNI
201: AAVTFTPQSK NGKMLMAKCR TLQEENEEIG HQAAEGKIHE LAIKLAMQKS QNAELRSQFE GLYKHMEELT NDVERSNETV IILQEKLEEK EKEIERVKKG
301: LEIVSELVGD KKDEVDEIDE DAKEEIAGGE
101: PEPRFLIDYI QNLKSSEKSL KEQLEIAKRK EASCIVQYAK REQEMAELKS AVRDLKSQLK PASMQARRLL LDPAIHEEFS RLKNLVEEKD KKIKELQDNI
201: AAVTFTPQSK NGKMLMAKCR TLQEENEEIG HQAAEGKIHE LAIKLAMQKS QNAELRSQFE GLYKHMEELT NDVERSNETV IILQEKLEEK EKEIERVKKG
301: LEIVSELVGD KKDEVDEIDE DAKEEIAGGE
Arabidopsis Description
FIP37FIP37 [Source:UniProtKB/TrEMBL;Acc:A0A178V9T4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.