Factsheet for Bra003174.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, endoplasmic reticulum

Predictor Summary:

nucleus 3
mitochondrion 1
extracellular 2
golgi 2
plasma membrane 2
endoplasmic reticulum 3
vacuole 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, nucleus
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	endoplasmic reticulum

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003173.1-P
Bra003174.1-P
Bra007052.1-P
Bra024287.1-P
Bra025770.1-P
Bra035280.1-P
Bra036122.1-P
Bra037775.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54170.1	Bra025770.1-P	AT1G19830.1	21798944
AT3G54170.1	Bra036122.1-P	AT1G54770.1	21798944
AT3G54170.1	Bra003173.1-P	AT3G54170.1	21798944
AT3G54170.1	Bra003174.1-P	AT3G54170.1	21798944
AT3G54170.1	Bra007052.1-P	AT3G54170.1	21798944
AT3G54170.1	Bra035280.1-P	AT4G10760.1	18505803
AT3G54170.1	Bra024287.1-P	AT5G64350.1	9807817
AT3G54170.1	Bra037775.1-P	AT5G64350.1	9807817

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67592	Canola	nucleus	85.52	73.84
CDY07554	Canola	nucleus	79.46	68.41
AT3G54170.1	Thale cress	nucleus	68.35	61.52
Bra007052.1-P	Field mustard	endoplasmic reticulum	68.69	58.62
VIT_17s0000g08940.t01	Wine grape	nucleus	54.55	47.09
KRH03247	Soybean	nucleus	54.21	46.94
KRH57111	Soybean	nucleus	53.54	46.9
PGSC0003DMT400046635	Potato	nucleus	53.2	46.2
Solyc03g112520.2.1	Tomato	nucleus	52.53	45.61
KRH54345	Soybean	nucleus	51.18	44.31
TraesCS7D01G234600.1	Wheat	nucleus	51.18	43.18
TraesCS7A01G234600.1	Wheat	nucleus	51.18	43.18
TraesCS7B01G132800.1	Wheat	nucleus	51.52	43.1
GSMUA_Achr6P08880_001	Banana	nucleus	51.18	43.06
KRH63594	Soybean	nucleus	50.84	42.66
Os06t0474200-01	Rice	nucleus	49.83	42.05
Zm00001d015194_P001	Maize	nucleus	49.83	40.0
EES04471	Sorghum	nucleus	49.49	39.84
HORVU7Hr1G048110.2	Barley	plastid	50.84	33.26
Bra003173.1-P	Field mustard	nucleus	24.58	32.74

Protein Annotations

MapMan:16.5.1.1.3	EnsemblPlantsGene:Bra003174	EnsemblPlants:Bra003174.1	EnsemblPlants:Bra003174.1-P	ncoils:Coil	GO:GO:0000381
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0080009	UniProt:M4CG41
PFAM:PF17098	PANTHER:PTHR15217	TMHMM:TMhelix	UniParc:UPI00025413D3	InterPro:WTAP	InterPro:WTAP/Mum2
SEG:seg	:	:	:	:	:

Description

AT3G54170 (E=1e-043) ATFIP37, FIP37 | ATFIP37 (ARABIDOPSIS THALIANA FKBP12 INTERACTING PROTEIN 37); protein binding

Coordinates

chrA07:+:11689131..11692868

Molecular Weight (calculated)

34462.1 Da

IEP (calculated)

5.369

GRAVY (calculated)

-0.693

Length

297 amino acids

Sequence
(BLAST)

001: MTTFSTTNLQ NCKDDLASSQ VLLLMISLFL YFYFSQYHFF FFVSNDHPYG QNELESAKAE ILKWKSAFQN ESFIPAGKSP EPRFLIDYIQ NLKSSERSLK
101: EQLEIAKRKE ASYIVQYAKR EQEMAELKSA VRDLKSQLKP ASMQNLVEEK DKKVKELQDS LTAFTFTPLS LKGKMLMEKC KTLQEENEEI GHQAAEGKIH
201: ELAMKLSMQK SQNAELRKQF EGLYKHMEEL TNDVERSNET VIILQDKLEE KDKELERVKK GMEVVVSDVA EKKDDGEDKD PKYSALQTMF TSIQSER

Best Arabidopsis Sequence Match ( AT3G54170.1 )
(BLAST)

001: MEFSSQDDDF GGDDSAANAT RASGNRRSFG DLEDDEDDIF GSTTVAPGVR TGMILSLRGS LKNCKDDLAS CQNELESAKT EIQKWKSAFQ NESFVPAGKS
101: PEPRFLIDYI QNLKSSEKSL KEQLEIAKRK EASCIVQYAK REQEMAELKS AVRDLKSQLK PASMQARRLL LDPAIHEEFS RLKNLVEEKD KKIKELQDNI
201: AAVTFTPQSK NGKMLMAKCR TLQEENEEIG HQAAEGKIHE LAIKLAMQKS QNAELRSQFE GLYKHMEELT NDVERSNETV IILQEKLEEK EKEIERVKKG
301: LEIVSELVGD KKDEVDEIDE DAKEEIAGGE

Arabidopsis Description

FIP37FIP37 [Source:UniProtKB/TrEMBL;Acc:A0A178V9T4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.