Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d012851_P001 | Maize | cytosol | 87.04 | 93.64 |
| OQU90613 | Sorghum | cytosol | 87.8 | 93.32 |
| HORVU5Hr1G121540.1 | Barley | cytosol | 77.61 | 83.49 |
| TraesCS5B01G549700.1 | Wheat | cytosol | 79.37 | 82.59 |
| TraesCS5D01G536700.1 | Wheat | cytosol | 78.99 | 82.2 |
| TraesCS4A01G335400.1 | Wheat | cytosol | 78.87 | 81.75 |
| Os03t0849600-01 | Rice | cytosol | 77.48 | 81.7 |
| GSMUA_AchrUn_... | Banana | cytosol | 61.89 | 65.6 |
| Solyc08g006660.1.1 | Tomato | plastid | 55.35 | 59.3 |
| PGSC0003DMT400067640 | Potato | cytosol, plastid | 55.22 | 59.16 |
| VIT_17s0000g01560.t01 | Wine grape | cytosol | 55.09 | 58.32 |
| AT4G24840.1 | Thale cress | cytosol, plastid | 54.84 | 57.67 |
| KRH03947 | Soybean | cytosol | 54.72 | 57.62 |
| Bra013840.1-P | Field mustard | mitochondrion | 47.3 | 57.4 |
| KRH57220 | Soybean | cytosol | 53.71 | 56.56 |
| CDY34317 | Canola | cytosol, plastid | 53.84 | 56.46 |
| CDX92658 | Canola | plastid | 53.71 | 56.41 |
| CDY11039 | Canola | cytosol | 53.46 | 56.14 |
| CDY03412 | Canola | plastid | 53.58 | 56.05 |
| CDX70811 | Canola | plastid | 48.55 | 53.24 |
| CDY51233 | Canola | cytosol, plastid | 47.8 | 52.49 |
| Bra006453.1-P | Field mustard | cytosol, plastid | 47.67 | 52.35 |
| Bra019205.1-P | Field mustard | cytosol | 53.71 | 50.12 |
Protein Annotations
| EntrezGene:100383630 | MapMan:22.6.2.2 | UniProt:A0A1D6LBW5 | InterPro:COG2 | InterPro:COG_complex_COG2_C | InterPro:COG_su2_N |
| ncoils:Coil | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0007030 | GO:GO:0008150 | GO:GO:0009987 |
| GO:GO:0015031 | GO:GO:0016020 | GO:GO:0016043 | ProteinID:ONM11592.1 | PFAM:PF06148 | PFAM:PF12022 |
| PANTHER:PTHR12961 | UniParc:UPI00084597A9 | EnsemblPlantsGene:Zm00001d034842 | EnsemblPlants:Zm00001d034842_P001 | EnsemblPlants:Zm00001d034842_T001 | SEG:seg |
Description
Oligomeric Golgi complex subunit 2
Coordinates
chr1:-:303635045..303640958
Molecular Weight (calculated)
88044.6 Da
IEP (calculated)
6.224
GRAVY (calculated)
-0.109
Length
795 amino acids
Sequence
(BLAST)
(BLAST)
001: MADLVMAPPP AMDLFGEPIE AHPPWFKPDA FLRAGFDADA YVAELRSYVP LDSLAAELRA HLAALRAELV GLINRDYADF VGLSAHLKGV DAAAARMRAP
101: LADLRDKVAA FRAGASAALA ALREGLQQRA AATAARELLE LLLDTSHVVS KVEKLIKELP TAPSDSSNAE IPINDTGTPN GKAGTGVRET QSILLERIAS
201: EMNRLKFYIS HAENLPFIEN MEKRIQGATK LLDGSLERCF VDGLEHRDAK VIYNCLRAYA AIDNTSSAEE LFRTTVVSPL IQKIVPQNYA RAVAGASSDE
301: LEEDYQQIKA CVEKDCKFIL EISSSENSGL HVFDFLGNSI LKEVLSAIQK GKPGAFSPGK PKEFLRNYKV SLGFLDFLEG YCFSKSAVTK LRYEPAYTDF
401: MRQWNVGVYF SLRFQEIAGG LDSTLTNTFS PTGLNEAQQK PLLLKQSIKL LESLDSCWSD EVLVFSHCDK FLRLSLQLIS RYTTWLSCGL SARKASDRSP
501: NSPADAEWAL SIPIEDFIYF MLSLKFLEFR SSYKMTSCFR SAQETCTGVG SVEKELQFVL CSPICGNSEI MHDVHAVIGE LSESGSFIGH VNQSLGSCPI
601: EVFNLVKGSI LQAAEPLKEL LPAIMDVMIG IIVKKSNEDL KHLKGITATY RMTSKLPVRH SPYVSGILHP LKVFLEGDRM HYLSEDDKTK LCRGSANKIT
701: ATYYDLVSEV VTVARKTESS LQRLRQGAQR RVGASTDASD SIISDTDKIC MQLFLDIQEY ARNLRAIGID AREIDSYRAL WQCVAPKDRH ENIQF
101: LADLRDKVAA FRAGASAALA ALREGLQQRA AATAARELLE LLLDTSHVVS KVEKLIKELP TAPSDSSNAE IPINDTGTPN GKAGTGVRET QSILLERIAS
201: EMNRLKFYIS HAENLPFIEN MEKRIQGATK LLDGSLERCF VDGLEHRDAK VIYNCLRAYA AIDNTSSAEE LFRTTVVSPL IQKIVPQNYA RAVAGASSDE
301: LEEDYQQIKA CVEKDCKFIL EISSSENSGL HVFDFLGNSI LKEVLSAIQK GKPGAFSPGK PKEFLRNYKV SLGFLDFLEG YCFSKSAVTK LRYEPAYTDF
401: MRQWNVGVYF SLRFQEIAGG LDSTLTNTFS PTGLNEAQQK PLLLKQSIKL LESLDSCWSD EVLVFSHCDK FLRLSLQLIS RYTTWLSCGL SARKASDRSP
501: NSPADAEWAL SIPIEDFIYF MLSLKFLEFR SSYKMTSCFR SAQETCTGVG SVEKELQFVL CSPICGNSEI MHDVHAVIGE LSESGSFIGH VNQSLGSCPI
601: EVFNLVKGSI LQAAEPLKEL LPAIMDVMIG IIVKKSNEDL KHLKGITATY RMTSKLPVRH SPYVSGILHP LKVFLEGDRM HYLSEDDKTK LCRGSANKIT
701: ATYYDLVSEV VTVARKTESS LQRLRQGAQR RVGASTDASD SIISDTDKIC MQLFLDIQEY ARNLRAIGID AREIDSYRAL WQCVAPKDRH ENIQF
001: MSDLVATSPS PSSAPRSATD FFSDPYDSHP LWFKPSLFLS PNFDSESYIS ELRTFVPFDT LRSELRSHLA SLNRELVDLI NRDYADFVNL STKLVDIDAA
101: VVRMRAPLLE LREKITGFRG SVEAALFALR NGLQQRSDAA AAREVLELLL DTFHVVSKVE KLIKVLPSTP SDWQNEDANS MGRSSMNDEN STQQDGTTMR
201: ETQSMLLERI ASEMNRLKFY MAHAQNLPFI ENMEKRIQSA SVLLDASLGH CFIDGLNNSD TSVLYNCLRA YAAIDNTNAA EEIFRTTIVA PFIQKIITHE
301: TTTNAAGTSE DELENDYKQI KHFIAKDCKM LLEISSTDKS GLHVFDFLAN SILKEVLWAI QKVKPGAFSP GRPTEFLKNY KASLDFLAYL EGYCPSRSAV
401: TKFRAEAICV EFMKQWNVGV YFSLRFQEIA GALDSALTSP SLVFIQDSDK ESSLNLILRQ SDTLLECLRS CWKEDVLVFS AADKFLRLTL QLLSRYSFWV
501: SSALNNRKSN ASPSPGCEWA VSATAEDFVY VIHDVNCLVS EVCGDYLGHI SQYLSSSSTE VLDVVRISIE QGGVSLEKVL PLLTKTIIDV IVDKSVEDLR
601: QLRGITATFR MTNKPLPVRH SPYVVGLLRP VKAFLEGDKA RNYLTQKTKE ELLHGSVSEI TRRYYELAAD VVSVARKTQS SLQKLRQNAQ RRGGAASGVS
701: DQNVSETDKM CMQLFLDIQE YGRNVSALGL KPADIPEYCS FWQCVAPADR QNSISV
101: VVRMRAPLLE LREKITGFRG SVEAALFALR NGLQQRSDAA AAREVLELLL DTFHVVSKVE KLIKVLPSTP SDWQNEDANS MGRSSMNDEN STQQDGTTMR
201: ETQSMLLERI ASEMNRLKFY MAHAQNLPFI ENMEKRIQSA SVLLDASLGH CFIDGLNNSD TSVLYNCLRA YAAIDNTNAA EEIFRTTIVA PFIQKIITHE
301: TTTNAAGTSE DELENDYKQI KHFIAKDCKM LLEISSTDKS GLHVFDFLAN SILKEVLWAI QKVKPGAFSP GRPTEFLKNY KASLDFLAYL EGYCPSRSAV
401: TKFRAEAICV EFMKQWNVGV YFSLRFQEIA GALDSALTSP SLVFIQDSDK ESSLNLILRQ SDTLLECLRS CWKEDVLVFS AADKFLRLTL QLLSRYSFWV
501: SSALNNRKSN ASPSPGCEWA VSATAEDFVY VIHDVNCLVS EVCGDYLGHI SQYLSSSSTE VLDVVRISIE QGGVSLEKVL PLLTKTIIDV IVDKSVEDLR
601: QLRGITATFR MTNKPLPVRH SPYVVGLLRP VKAFLEGDKA RNYLTQKTKE ELLHGSVSEI TRRYYELAAD VVSVARKTQS SLQKLRQNAQ RRGGAASGVS
701: DQNVSETDKM CMQLFLDIQE YGRNVSALGL KPADIPEYCS FWQCVAPADR QNSISV
Arabidopsis Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein transport, Golgi organization; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: COG complex component, COG2 (InterP /.../009316); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). [Source:TAIR;Acc:AT4G24840]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.