Factsheet for Zm00001d031326_P003

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

mitochondrion 5
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

plasma membrane: 27341663

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG25675	Sorghum	nucleus	86.26	86.26
Os01t0104800-01	Rice	nucleus	60.03	58.91
TraesCS7D01G387100.1	Wheat	mitochondrion	52.13	50.46
TraesCS7A01G391500.1	Wheat	mitochondrion	52.13	50.38
TraesCS7B01G293400.1	Wheat	mitochondrion	52.13	50.23
HORVU7Hr1G092560.2	Barley	mitochondrion	51.97	50.08
GSMUA_Achr6P08480_001	Banana	nucleus	38.86	37.22
VIT_05s0094g00440.t01	Wine grape	nucleus	39.97	36.4
CDX83470	Canola	nucleus	36.49	35.48
Bra000317.1-P	Field mustard	nucleus	36.18	35.12
Solyc11g072390.1.1	Tomato	nucleus	35.55	34.51
KRH50217	Soybean	cytosol, nucleus, plastid	35.7	33.83
AT2G43650.1	Thale cress	nucleus	34.12	33.03
CDY44246	Canola	nucleus	33.97	32.04
KRH71214	Soybean	nucleus	36.02	31.84
Solyc11g072320.1.1	Tomato	nucleus	35.07	31.76
Zm00001d046836_P003	Maize	nucleus	10.74	20.54
Zm00001d012087_P005	Maize	nucleus	10.43	19.88
Zm00001d009962_P002	Maize	mitochondrion, plastid	4.74	15.31
Zm00001d019592_P001	Maize	nucleus	1.74	12.79
Zm00001d014256_P003	Maize	cytosol	4.58	11.33
Zm00001d026099_P002	Maize	endoplasmic reticulum, extracellular, vacuole	4.58	11.28

Protein Annotations

EntrezGene:100381768	MapMan:35.2	UniProt:A0A1D6KI86	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005730	GO:GO:0006139	GO:GO:0006364	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0019013	GO:GO:0030529	ProteinID:ONM02702.1	ProteinID:ONM02703.1	PFAM:PF04000
PFAM:PF09368	PANTHER:PTHR13237	PANTHER:PTHR13237:SF8	InterPro:Sas10/Utp3/C1D	InterPro:Sas10_C_dom	UniParc:UPI0002215831
EnsemblPlantsGene:Zm00001d031326	EnsemblPlants:Zm00001d031326_P003	EnsemblPlants:Zm00001d031326_T003	SEG:seg	:	:

Description

Sas10/U3 ribonucleoprotein (Utp) family protein

Coordinates

chr1:-:186054718..186062670

Molecular Weight (calculated)

71466.3 Da

IEP (calculated)

5.939

GRAVY (calculated)

-1.129

Length

633 amino acids

Sequence
(BLAST)

001: MGKRPRTTLR RTPARGLPKS KRADELPSMP DSDNDEIDAF HKQRDMIPFD ANDVRESEDD DVEQPVFDLK GVSDSESDDS KGELSGDMAE ADYEGWDKGY
101: ISKLKRAQRA VKQIAGGDDS MDEQEDETQE NVWGRGKNAY YAPGEQSGDD EVDYEEAQRI QKNKEKRLSM KDFGLEDGES DEEGNATKVS NHESKMKEDF
201: AVLSGDEKMD VLYSSAPELV SLLSELKDAH EELRAIGQLT SEVTSCLGKD KMQPFEVKKA CLLAHCQAIT FYLLMKSEGL SVQDHPVISR LIETKNMVEK
301: IKQITLNPVS QKGCADDHSM HCGTIQTDKI VSLDKQEGKF SNVLALDKVK QGAEVSESRK SEPCNNDYHE VNEQKNKDER MGLHSLEMLK VRANLEERLK
401: KKGLYNLTRS KPEKSSKTRT TSDKSGLQTL DDFDDEVLKN NQMMKPSKLV AAAAKSNKSM FVSGDDDLPK RDNIGERRRK HELRVLSRVG ANSAEDHELP
501: DGDASEEEDH HELPEGGDES EDDIHRDVKR KRTEKLSTKN ALYSPTPGVE HLEEETEGDG KRTISYQILK NRGLTRSRNK KKKNPRKNYR DKHKNKLVKR
601: KGQVRDIKKQ SGPYGGETSG INPNVSRSVR FKS

Best Arabidopsis Sequence Match ( AT2G43650.1 )
(BLAST)

001: MGKKGGTLKR SSKSTKTRKD IVEDQYDDEI DAFHKQRDIV PLDVNDDTDE SDEDDVQPVF DLQGVDDESE EDEDTEDEEE AENGLTAKMI RQKKYLRAKF
101: GDGDDEMADD DKDKEEDKRS TWGGRSGLYH SGDNVDFDIL SSDDEDIKAE EEEVIRLRAE QLGSITAADA GLDDDSEEDS DRELTMEEIS DKGKQATKSI
201: TDKKEKGDKD THVEEIKKDI NSLSKEEQMD VVYSSAPEIV GLLSELNDAV EELESKINPV MNKLKEGEIS LNGLARYLEV KQLLLLTYCQ SITFYLLLKS
301: EGQPIRDHPV LARLVEIKSL LDKIKELDEE LPPGFEESLA RSIANGAVQK VVKEDQLTSP VSDSVDRITQ DTAKPMKIDN AREEKKKKGE KRKHQNDLVD
401: VQSEEMLKLR AALEGKLRTN GVLGSTVSKS DKAQKRQKLA NRKLETFDDY VDDADNSTHN VTADKLTKLV STKRKPKTIS GDDDLPQRDD IGERRRKFEL
501: RVLAGAGVKS SEGDGRNKNG AFASDDEDDN DGDNNDMVDN DGESEDEFYK QVKQKQQAKR AAKAEIYSRK PHLMPSSPEH VDGKRHISNQ MVSNRGLTRQ
601: RNRDLKNPRK KYRKNYEKKV TRRKGQVRDI RKQTGPYAGE ARGINPNTSR SIRM

Arabidopsis Description

EMB2777Sas10/U3 ribonucleoprotein (Utp) family protein [Source:UniProtKB/TrEMBL;Acc:Q8L3P4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.