Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- peroxisome 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc11g072390.1.1 | Tomato | nucleus | 50.36 | 53.68 |
| GSMUA_Achr6P08480_001 | Banana | nucleus | 49.06 | 51.59 |
| KRH50217 | Soybean | cytosol, nucleus, plastid | 48.2 | 50.15 |
| AT2G43650.1 | Thale cress | nucleus | 46.76 | 49.69 |
| Solyc11g072320.1.1 | Tomato | nucleus | 49.21 | 48.93 |
| CDX83470 | Canola | nucleus | 45.18 | 48.23 |
| Bra000317.1-P | Field mustard | nucleus | 45.04 | 48.01 |
| KRH71214 | Soybean | nucleus | 47.34 | 45.95 |
| CDY44246 | Canola | nucleus | 43.02 | 44.56 |
| KXG25675 | Sorghum | nucleus | 37.12 | 40.76 |
| Zm00001d031326_P003 | Maize | plasma membrane | 36.4 | 39.97 |
| Os01t0104800-01 | Rice | nucleus | 36.4 | 39.22 |
| TraesCS7B01G293400.1 | Wheat | mitochondrion | 34.68 | 36.68 |
| HORVU7Hr1G092560.2 | Barley | mitochondrion | 34.68 | 36.68 |
| TraesCS7D01G387100.1 | Wheat | mitochondrion | 34.39 | 36.54 |
| TraesCS7A01G391500.1 | Wheat | mitochondrion | 34.24 | 36.34 |
| TraesCS5A01G398400.1 | Wheat | mitochondrion | 16.4 | 25.28 |
| VIT_15s0046g02660.t01 | Wine grape | nucleus | 8.92 | 19.62 |
| VIT_18s0001g07750.t01 | Wine grape | nucleus | 8.49 | 18.44 |
Protein Annotations
| EntrezGene:100264445 | wikigene:100264445 | MapMan:35.2 | ProteinID:CCB49375 | ProteinID:CCB49375.1 | ncoils:Coil |
| UniProt:F6HAX1 | EMBL:FN595507 | GO:GO:0000462 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005730 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0032040 | EntrezGene:LOC100264445 | wikigene:LOC100264445 | PFAM:PF04000 | PFAM:PF09368 | PANTHER:PTHR13237 |
| PANTHER:PTHR13237:SF8 | InterPro:Sas10/Utp3/C1D | InterPro:Sas10_C_dom | UniParc:UPI000210928B | ArrayExpress:VIT_05s0094g00440 | EnsemblPlantsGene:VIT_05s0094g00440 |
| EnsemblPlants:VIT_05s0094g00440.t01 | unigene:Vvi.12089 | RefSeq:XP_002273791 | RefSeq:XP_002273791.1 | SEG:seg | : |
Description
No Description!
Coordinates
chr5:+:23764864..23781936
Molecular Weight (calculated)
78585.2 Da
IEP (calculated)
4.694
GRAVY (calculated)
-0.967
Length
695 amino acids
Sequence
(BLAST)
(BLAST)
001: MYSDGNKIFL QKMYLDVISA DLKASVMGKR GRSQKKDNRN PKRRTRDKDV LPEDMDDEID AFHKQRDVIP LDMNGDAGES DEDNEQPVFD VENFSDDEDE
101: DDDVDDDTQL TGLAAKIARQ QKFLRAKIGG VEDEMHEEEE EDEEEKKTVW GRRKSDYYSA DNVDYELQSS DEELPAEEEA EVMRLQREKA KFLSMEDFGI
201: EDANQDESDG EPTMEEIMVK GKTTSKSLAD EEAKDDTGTA YEEVKKDLNA LSKEEQMDVV YSSAPELVGL LSELNDALEQ LEGKVNPLLA KVKGQNTKEG
301: TRYLEVKQIL LLAYCQAITF YLLLKSEGQP VRDHPVIARL VEIKSLLDKM KQLDENLPAD LEEFLDKSHG AETKEMLVRE AAKLASDSFA KEHELAQKQE
401: IVMHKKAAKS VDEMRESKEG KSKRQNDQVG LQRMEMLKVR AALEDKLKQK GVFSSITPKP DRAQKRLQPV NRQLETLDDF DDDAMDVEGR TGGLTNGQAG
501: SLPSSKLSHL VSANMKKPKI VSGDDDLPKR DDIGERRRKH ELRVLAGAGI EPMDDDEDGI CTVDVDKDAN MDDNDSGTEE SEDEFYKQVK QLRAAKLAAK
601: EEIYSRTSAA QTSAEPEILE DGKRQISYQM EKNKGLTRAR KKLTKNPRKK YKLKHQKAVV RRKGQVREIR KATGPYGGEA TGINVGITRS IRFKG
101: DDDVDDDTQL TGLAAKIARQ QKFLRAKIGG VEDEMHEEEE EDEEEKKTVW GRRKSDYYSA DNVDYELQSS DEELPAEEEA EVMRLQREKA KFLSMEDFGI
201: EDANQDESDG EPTMEEIMVK GKTTSKSLAD EEAKDDTGTA YEEVKKDLNA LSKEEQMDVV YSSAPELVGL LSELNDALEQ LEGKVNPLLA KVKGQNTKEG
301: TRYLEVKQIL LLAYCQAITF YLLLKSEGQP VRDHPVIARL VEIKSLLDKM KQLDENLPAD LEEFLDKSHG AETKEMLVRE AAKLASDSFA KEHELAQKQE
401: IVMHKKAAKS VDEMRESKEG KSKRQNDQVG LQRMEMLKVR AALEDKLKQK GVFSSITPKP DRAQKRLQPV NRQLETLDDF DDDAMDVEGR TGGLTNGQAG
501: SLPSSKLSHL VSANMKKPKI VSGDDDLPKR DDIGERRRKH ELRVLAGAGI EPMDDDEDGI CTVDVDKDAN MDDNDSGTEE SEDEFYKQVK QLRAAKLAAK
601: EEIYSRTSAA QTSAEPEILE DGKRQISYQM EKNKGLTRAR KKLTKNPRKK YKLKHQKAVV RRKGQVREIR KATGPYGGEA TGINVGITRS IRFKG
001: MGKKGGTLKR SSKSTKTRKD IVEDQYDDEI DAFHKQRDIV PLDVNDDTDE SDEDDVQPVF DLQGVDDESE EDEDTEDEEE AENGLTAKMI RQKKYLRAKF
101: GDGDDEMADD DKDKEEDKRS TWGGRSGLYH SGDNVDFDIL SSDDEDIKAE EEEVIRLRAE QLGSITAADA GLDDDSEEDS DRELTMEEIS DKGKQATKSI
201: TDKKEKGDKD THVEEIKKDI NSLSKEEQMD VVYSSAPEIV GLLSELNDAV EELESKINPV MNKLKEGEIS LNGLARYLEV KQLLLLTYCQ SITFYLLLKS
301: EGQPIRDHPV LARLVEIKSL LDKIKELDEE LPPGFEESLA RSIANGAVQK VVKEDQLTSP VSDSVDRITQ DTAKPMKIDN AREEKKKKGE KRKHQNDLVD
401: VQSEEMLKLR AALEGKLRTN GVLGSTVSKS DKAQKRQKLA NRKLETFDDY VDDADNSTHN VTADKLTKLV STKRKPKTIS GDDDLPQRDD IGERRRKFEL
501: RVLAGAGVKS SEGDGRNKNG AFASDDEDDN DGDNNDMVDN DGESEDEFYK QVKQKQQAKR AAKAEIYSRK PHLMPSSPEH VDGKRHISNQ MVSNRGLTRQ
601: RNRDLKNPRK KYRKNYEKKV TRRKGQVRDI RKQTGPYAGE ARGINPNTSR SIRM
101: GDGDDEMADD DKDKEEDKRS TWGGRSGLYH SGDNVDFDIL SSDDEDIKAE EEEVIRLRAE QLGSITAADA GLDDDSEEDS DRELTMEEIS DKGKQATKSI
201: TDKKEKGDKD THVEEIKKDI NSLSKEEQMD VVYSSAPEIV GLLSELNDAV EELESKINPV MNKLKEGEIS LNGLARYLEV KQLLLLTYCQ SITFYLLLKS
301: EGQPIRDHPV LARLVEIKSL LDKIKELDEE LPPGFEESLA RSIANGAVQK VVKEDQLTSP VSDSVDRITQ DTAKPMKIDN AREEKKKKGE KRKHQNDLVD
401: VQSEEMLKLR AALEGKLRTN GVLGSTVSKS DKAQKRQKLA NRKLETFDDY VDDADNSTHN VTADKLTKLV STKRKPKTIS GDDDLPQRDD IGERRRKFEL
501: RVLAGAGVKS SEGDGRNKNG AFASDDEDDN DGDNNDMVDN DGESEDEFYK QVKQKQQAKR AAKAEIYSRK PHLMPSSPEH VDGKRHISNQ MVSNRGLTRQ
601: RNRDLKNPRK KYRKNYEKKV TRRKGQVRDI RKQTGPYAGE ARGINPNTSR SIRM
Arabidopsis Description
EMB2777Sas10/U3 ribonucleoprotein (Utp) family protein [Source:UniProtKB/TrEMBL;Acc:Q8L3P4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.