Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra000317.1-P | Field mustard | nucleus | 96.47 | 96.32 |
| CDY44246 | Canola | nucleus | 88.17 | 85.54 |
| AT2G43650.1 | Thale cress | nucleus | 67.74 | 67.43 |
| CDY23385 | Canola | nucleus | 21.2 | 52.27 |
| CDY30426 | Canola | nucleus | 17.82 | 51.1 |
| VIT_05s0094g00440.t01 | Wine grape | nucleus | 48.23 | 45.18 |
| Solyc11g072390.1.1 | Tomato | nucleus | 42.24 | 42.18 |
| KRH50217 | Soybean | cytosol, nucleus, plastid | 42.4 | 41.32 |
| GSMUA_Achr6P08480_001 | Banana | nucleus | 41.32 | 40.7 |
| CDY23387 | Canola | nucleus | 11.37 | 38.14 |
| KRH71214 | Soybean | nucleus | 41.94 | 38.13 |
| Solyc11g072320.1.1 | Tomato | nucleus | 40.86 | 38.05 |
| KXG25675 | Sorghum | nucleus | 36.41 | 37.44 |
| Os01t0104800-01 | Rice | nucleus | 36.56 | 36.9 |
| Zm00001d031326_P003 | Maize | plasma membrane | 35.48 | 36.49 |
| HORVU7Hr1G092560.2 | Barley | mitochondrion | 35.02 | 34.7 |
| TraesCS7B01G293400.1 | Wheat | mitochondrion | 35.02 | 34.7 |
| TraesCS7A01G391500.1 | Wheat | mitochondrion | 34.87 | 34.66 |
| TraesCS7D01G387100.1 | Wheat | mitochondrion | 34.56 | 34.4 |
| TraesCS5A01G398400.1 | Wheat | mitochondrion | 16.9 | 24.39 |
| CDX93614 | Canola | nucleus | 9.06 | 18.91 |
| CDX95119 | Canola | plastid | 9.83 | 17.11 |
| CDX93612 | Canola | cytosol | 2.76 | 4.28 |
| CDX95118 | Canola | nucleus, peroxisome, plasma membrane, plastid | 3.07 | 3.72 |
Protein Annotations
| EnsemblPlants:CDX83470 | EnsemblPlantsGene:GSBRNA2T00139048001 | InterPro:Sas10/Utp3/C1D | InterPro:Sas10_C_dom | ncoils:Coil | PANTHER:PTHR13237 |
| PANTHER:PTHR13237:SF8 | PFAM:PF04000 | PFAM:PF09368 | ProteinID:CDX83470 | ProteinID:CDX83470.1 | SEG:seg |
| UniParc:UPI0004EDE3E0 | MapMan:35.2 | : | : | : | : |
Description
BnaA03g20360D
Coordinates
chrLK031832:-:1663452..1667217
Molecular Weight (calculated)
73350.7 Da
IEP (calculated)
4.511
GRAVY (calculated)
-1.094
Length
651 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKKGGFKKR VSKSAKPRDD FVDGEYDDEI DAFHKQRDIV PLDVNDDTDD SSDEDDVQPV FDLKGVDDDE DEDEDTEEEE EEDKGLIAKM VGQNKYLKAK
101: FGAVDDEMAD DDKDEDEENK RVTWGSRKNA YMNADNVDFE NLSSDDEDLK LEEDEVLRMR AEQTGSITAA DAGLEDDSEE EEESDRELTM EEISVKGKNG
201: TKSVTDKKEK DVEVIKKDIN SLSKEEQMDV VYSSAPEIVG LLSELNDAVE ELENKINPVM SKLKEEGVSL TGGARYLEVK QILLLAYCQS ITFYFLLKSE
301: GQPIRDHPVL ARLVDIKALL DKIKELDGEL PPGFEESLAR MQKVVKEDAT SSPVSASEVK ITQDTVEPVK INTSKADTKK KGEKRKHKND QVDIQSEEML
401: KLRAALEGKL RSNGVFGSTV SKPDKSQKRQ KLANRKLETF DDFVDDADNS TRDVPADKLT KLVSTKRKPK TVSGDDDLPQ RDDIGERRRK FELKVLAGAG
501: VKSEEDGKNE SEVFGSDDDN DKDEDDDNDM VDSDSESEGE DEFYKQVKQN KQAKRAAKAE IYSREPSSIS FEPETVDGKR VVSKTILSNR GLTRHRNKDK
601: KNPRKNYRDK YTDKVKRRKG QVREIRKPTG SYGGEGSGIN PNISRSVRIK S
101: FGAVDDEMAD DDKDEDEENK RVTWGSRKNA YMNADNVDFE NLSSDDEDLK LEEDEVLRMR AEQTGSITAA DAGLEDDSEE EEESDRELTM EEISVKGKNG
201: TKSVTDKKEK DVEVIKKDIN SLSKEEQMDV VYSSAPEIVG LLSELNDAVE ELENKINPVM SKLKEEGVSL TGGARYLEVK QILLLAYCQS ITFYFLLKSE
301: GQPIRDHPVL ARLVDIKALL DKIKELDGEL PPGFEESLAR MQKVVKEDAT SSPVSASEVK ITQDTVEPVK INTSKADTKK KGEKRKHKND QVDIQSEEML
401: KLRAALEGKL RSNGVFGSTV SKPDKSQKRQ KLANRKLETF DDFVDDADNS TRDVPADKLT KLVSTKRKPK TVSGDDDLPQ RDDIGERRRK FELKVLAGAG
501: VKSEEDGKNE SEVFGSDDDN DKDEDDDNDM VDSDSESEGE DEFYKQVKQN KQAKRAAKAE IYSREPSSIS FEPETVDGKR VVSKTILSNR GLTRHRNKDK
601: KNPRKNYRDK YTDKVKRRKG QVREIRKPTG SYGGEGSGIN PNISRSVRIK S
001: MGKKGGTLKR SSKSTKTRKD IVEDQYDDEI DAFHKQRDIV PLDVNDDTDE SDEDDVQPVF DLQGVDDESE EDEDTEDEEE AENGLTAKMI RQKKYLRAKF
101: GDGDDEMADD DKDKEEDKRS TWGGRSGLYH SGDNVDFDIL SSDDEDIKAE EEEVIRLRAE QLGSITAADA GLDDDSEEDS DRELTMEEIS DKGKQATKSI
201: TDKKEKGDKD THVEEIKKDI NSLSKEEQMD VVYSSAPEIV GLLSELNDAV EELESKINPV MNKLKEGEIS LNGLARYLEV KQLLLLTYCQ SITFYLLLKS
301: EGQPIRDHPV LARLVEIKSL LDKIKELDEE LPPGFEESLA RSIANGAVQK VVKEDQLTSP VSDSVDRITQ DTAKPMKIDN AREEKKKKGE KRKHQNDLVD
401: VQSEEMLKLR AALEGKLRTN GVLGSTVSKS DKAQKRQKLA NRKLETFDDY VDDADNSTHN VTADKLTKLV STKRKPKTIS GDDDLPQRDD IGERRRKFEL
501: RVLAGAGVKS SEGDGRNKNG AFASDDEDDN DGDNNDMVDN DGESEDEFYK QVKQKQQAKR AAKAEIYSRK PHLMPSSPEH VDGKRHISNQ MVSNRGLTRQ
601: RNRDLKNPRK KYRKNYEKKV TRRKGQVRDI RKQTGPYAGE ARGINPNTSR SIRM
101: GDGDDEMADD DKDKEEDKRS TWGGRSGLYH SGDNVDFDIL SSDDEDIKAE EEEVIRLRAE QLGSITAADA GLDDDSEEDS DRELTMEEIS DKGKQATKSI
201: TDKKEKGDKD THVEEIKKDI NSLSKEEQMD VVYSSAPEIV GLLSELNDAV EELESKINPV MNKLKEGEIS LNGLARYLEV KQLLLLTYCQ SITFYLLLKS
301: EGQPIRDHPV LARLVEIKSL LDKIKELDEE LPPGFEESLA RSIANGAVQK VVKEDQLTSP VSDSVDRITQ DTAKPMKIDN AREEKKKKGE KRKHQNDLVD
401: VQSEEMLKLR AALEGKLRTN GVLGSTVSKS DKAQKRQKLA NRKLETFDDY VDDADNSTHN VTADKLTKLV STKRKPKTIS GDDDLPQRDD IGERRRKFEL
501: RVLAGAGVKS SEGDGRNKNG AFASDDEDDN DGDNNDMVDN DGESEDEFYK QVKQKQQAKR AAKAEIYSRK PHLMPSSPEH VDGKRHISNQ MVSNRGLTRQ
601: RNRDLKNPRK KYRKNYEKKV TRRKGQVRDI RKQTGPYAGE ARGINPNTSR SIRM
Arabidopsis Description
EMB2777Sas10/U3 ribonucleoprotein (Utp) family protein [Source:UniProtKB/TrEMBL;Acc:Q8L3P4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.