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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • nucleus 3
  • plastid 3
  • mitochondrion 2
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, nucleus, plastid
BaCelLo:nucleus
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:nucleus
Predotar:plastid
PProwler:mitochondrion
TargetP:plastid
WoLF PSORT:nucleus
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX93614 Canola nucleus 79.68 95.51
Bra018680.1-P Field mustard nucleus 72.46 87.42
AT1G07840.2 Thale cress nucleus 61.23 73.4
HORVU3Hr1G067740.1 Barley cytosol 16.04 58.82
PGSC0003DMT400024201 Potato cytosol 39.3 56.54
HORVU5Hr1G077970.1 Barley cytosol 22.73 55.19
VIT_15s0046g02660.t01 Wine grape nucleus 45.99 54.43
Solyc04g076560.2.1 Tomato nucleus 44.65 53.35
VIT_18s0001g07750.t01 Wine grape nucleus 44.12 51.56
PGSC0003DMT400022451 Potato nucleus 43.05 51.11
KRH62262 Soybean nucleus 41.18 48.58
KRH52980 Soybean nucleus 40.91 48.27
TraesCS5D01G303800.1 Wheat nucleus 41.18 47.09
TraesCS5A01G296700.1 Wheat nucleus 40.64 46.48
GSMUA_Achr4P33490_001 Banana nucleus 41.98 46.31
TraesCS5B01G296000.1 Wheat nucleus 40.37 45.9
Zm00001d012087_P005 Maize nucleus 38.5 43.37
EES04083 Sorghum nucleus 38.5 43.24
Zm00001d046836_P003 Maize nucleus 37.7 42.6
HORVU5Hr1G078110.2 Barley nucleus, plastid 41.44 40.36
TraesCS3A01G436800.1 Wheat nucleus 17.38 32.83
HORVU3Hr1G095480.13 Barley nucleus 8.29 29.25
Zm00001d019592_P001 Maize nucleus 6.68 29.07
Zm00001d026099_P002 Maize endoplasmic reticulum, extracellular, vacuole 14.71 21.4
CDY23387 Canola nucleus 7.49 14.43
CDY30426 Canola nucleus 8.29 13.66
CDY23385 Canola nucleus 9.63 13.64
CDX83470 Canola nucleus 17.11 9.83
CDY44246 Canola nucleus 17.11 9.54
CDX93612 Canola cytosol 6.42 5.7
CDX95118 Canola nucleus, peroxisome, plasma membrane, plastid 6.42 4.47
Protein Annotations
EnsemblPlants:CDX95119EnsemblPlantsGene:GSBRNA2T00100660001InterPro:Sas10/Utp3/C1Dncoils:CoilPANTHER:PTHR13237PANTHER:PTHR13237:SF7
PFAM:PF04000ProteinID:CDX95119ProteinID:CDX95119.1SEG:segUniParc:UPI0004EF0CA0MapMan:35.2
Description
BnaC05g05520D
Coordinates
chrLK031886:-:1259472..1262376
Molecular Weight (calculated)
43002.1 Da
IEP (calculated)
8.876
GRAVY (calculated)
-0.851
Length
374 amino acids
Sequence
(BLAST)
001: MEKNWFSASY SLHKPLSQQK SFCVDFPSQC CRDLFYRRPS AAVTVSIKLS NSLSSSSCFS ASMMEEIKKP GLVETINREA PQLATLLREM KEGLDVVRSK
101: VEALTAKVKA DSYPTADGMS YLEAKHLLLL SYCQCLVYYL LRKAKGFSID GHPVVRSLVE IRMFLEKIRP IDKKLQYQIQ KLTTAGASVA EQTLSEGKET
201: EKSEDVSNYK PKPDLLADKM EDEPMDGVYR PPKFAPMSMD DKTSKQERDA ARKEKHFLRQ ATENTYMKDV LDELEDRPEE IRDWHGAESK EQRKFIAQYE
301: RQQEVEEELF ARAPRTKEDK KREKRLKSRS GLHGLTESFD DEFKFLDEDG EKQSSFGGSG RKSGGRSKRR KTRH
Best Arabidopsis Sequence Match ( AT1G07840.2 )
(BLAST)
001: MEEITKPVLV GIVKKEAPQL ASVLREMKNV LDVVRSKVEA LTALVKANSF PTAGGISYLE AKHLLLLSYC QDLVYYILRK AKGLSIDGHP LVRSLVEIRM
101: FLEKIRPIDK KLQYQIQKLT TAGGPVTELA HSEGKGSCEA QKSEDLSNYK PKPDLLADKE DDQEDDGVYR PPKFAPMSME DKTSKQERDA ARKEKHFFRQ
201: ATENTYMKDV LDDLEDRPEE IRDYYGVESN EQKRFMAQYE RQQKAEEELF TRAPRTKEDK KREKRLKSSS GLHELTENFY DDIKFLDKDG EKPRSFGRNK
301: RGGPFKKRKT RH
Arabidopsis Description
AT1G07840 protein [Source:UniProtKB/TrEMBL;Acc:Q93ZQ9]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.