Factsheet for Bra018680.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93614	Canola	nucleus	89.35	88.78
CDX95119	Canola	plastid	87.42	72.46
AT1G07840.2	Thale cress	nucleus	70.0	69.55
HORVU3Hr1G067740.1	Barley	cytosol	19.03	57.84
PGSC0003DMT400024201	Potato	cytosol	47.74	56.92
VIT_18s0001g07750.t01	Wine grape	nucleus	55.81	54.06
VIT_15s0046g02660.t01	Wine grape	nucleus	54.84	53.8
Solyc04g076560.2.1	Tomato	nucleus	53.55	53.04
HORVU5Hr1G077970.1	Barley	cytosol	26.13	52.6
PGSC0003DMT400022451	Potato	nucleus	52.58	51.75
KRH62262	Soybean	nucleus	48.71	47.63
KRH52980	Soybean	nucleus	48.39	47.32
TraesCS5B01G296000.1	Wheat	nucleus	49.03	46.2
TraesCS5D01G303800.1	Wheat	nucleus	48.06	45.57
TraesCS5A01G296700.1	Wheat	nucleus	47.42	44.95
GSMUA_Achr4P33490_001	Banana	nucleus	47.74	43.66
Zm00001d012087_P005	Maize	nucleus	45.81	42.77
EES04083	Sorghum	nucleus	45.48	42.34
Zm00001d046836_P003	Maize	nucleus	45.16	42.3
HORVU5Hr1G078110.2	Barley	nucleus, plastid	47.42	38.28
TraesCS3A01G436800.1	Wheat	nucleus	20.97	32.83
HORVU3Hr1G095480.13	Barley	nucleus	9.35	27.36
Zm00001d019592_P001	Maize	nucleus	7.42	26.74
Zm00001d026099_P002	Maize	endoplasmic reticulum, extracellular, vacuole	16.77	20.23
Bra037695.1-P	Field mustard	nucleus	11.61	14.52
Bra000317.1-P	Field mustard	nucleus	20.0	9.51
Bra018679.1-P	Field mustard	cytosol	8.06	5.94

Protein Annotations

EnsemblPlants:Bra018680.1	EnsemblPlants:Bra018680.1-P	EnsemblPlantsGene:Bra018680	InterPro:Sas10/Utp3/C1D	ncoils:Coil	PANTHER:PTHR13237
PANTHER:PTHR13237:SF7	PFAM:PF04000	SEG:seg	UniParc:UPI000253EDE6	UniProt:M4DQ87	MapMan:35.2

Description

AT1G07840 (E=1e-131) | leucine zipper factor-related

Coordinates

chrA06:+:2644190..2645910

Molecular Weight (calculated)

35795.7 Da

IEP (calculated)

8.561

GRAVY (calculated)

-0.952

Length

310 amino acids

Sequence
(BLAST)

001: MMEEIKKPGL VETIKREAPQ LATVLREMKE GLDVVRSKVE ALTAKVKADS YPTADGMSYL EAKHLLLLSY CQCLVYYLLR KAKGFSIDGH PVVRSLVEMR
101: MFLEKIRPID KKLQYQIQKL TTAGASVTEQ TLSEGKEAEK SEDVSNYKPK PDLLADKMED EPMDGVYRPP KFAPMSMDDK TSKQERDAAR KEKHFLRQAT
201: ENTYMKDVLD ELEDRPEEIR DWHGAESKEQ RKFIAQYERQ QEVEEELFAR APRTKEDKKR EKRLKSRSGL HGLTESFDDE FKFLDEDGEK QSSFGGSGRK
301: SGGRSKRRKV

Best Arabidopsis Sequence Match ( AT1G07840.2 )
(BLAST)

001: MEEITKPVLV GIVKKEAPQL ASVLREMKNV LDVVRSKVEA LTALVKANSF PTAGGISYLE AKHLLLLSYC QDLVYYILRK AKGLSIDGHP LVRSLVEIRM
101: FLEKIRPIDK KLQYQIQKLT TAGGPVTELA HSEGKGSCEA QKSEDLSNYK PKPDLLADKE DDQEDDGVYR PPKFAPMSME DKTSKQERDA ARKEKHFFRQ
201: ATENTYMKDV LDDLEDRPEE IRDYYGVESN EQKRFMAQYE RQQKAEEELF TRAPRTKEDK KREKRLKSSS GLHELTENFY DDIKFLDKDG EKPRSFGRNK
301: RGGPFKKRKT RH

Arabidopsis Description

AT1G07840 protein [Source:UniProtKB/TrEMBL;Acc:Q93ZQ9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.