Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU3Hr1G067740.1 | Barley | cytosol | 48.05 | 72.55 |
| HORVU5Hr1G078110.2 | Barley | nucleus, plastid | 87.66 | 35.16 |
| PGSC0003DMT400024201 | Potato | cytosol | 53.9 | 31.92 |
| EES04083 | Sorghum | nucleus | 67.53 | 31.23 |
| Zm00001d046836_P003 | Maize | nucleus | 66.88 | 31.12 |
| Zm00001d012087_P005 | Maize | nucleus | 66.23 | 30.72 |
| VIT_15s0046g02660.t01 | Wine grape | nucleus | 54.55 | 26.58 |
| Solyc04g076560.2.1 | Tomato | nucleus | 53.9 | 26.52 |
| CDX93614 | Canola | nucleus | 53.25 | 26.28 |
| Bra018680.1-P | Field mustard | nucleus | 52.6 | 26.13 |
| AT1G07840.2 | Thale cress | nucleus | 52.6 | 25.96 |
| PGSC0003DMT400022451 | Potato | nucleus | 52.6 | 25.71 |
| GSMUA_Achr4P33490_001 | Banana | nucleus | 56.49 | 25.66 |
| KRH52980 | Soybean | nucleus | 52.6 | 25.55 |
| VIT_18s0001g07750.t01 | Wine grape | nucleus | 51.95 | 25.0 |
| KRH62262 | Soybean | nucleus | 50.65 | 24.61 |
| CDX95119 | Canola | plastid | 55.19 | 22.73 |
| Zm00001d026099_P002 | Maize | endoplasmic reticulum, extracellular, vacuole | 9.74 | 5.84 |
| HORVU7Hr1G092560.2 | Barley | mitochondrion | 24.68 | 5.78 |
| Zm00001d019592_P001 | Maize | nucleus | 0.65 | 1.16 |
| HORVU3Hr1G095480.13 | Barley | nucleus | 0.65 | 0.94 |
Protein Annotations
| EnsemblPlants:HORVU5Hr1G077970.1 | EnsemblPlantsGene:HORVU5Hr1G077970 | InterPro:Sas10/Utp3/C1D | ncoils:Coil | PANTHER:PTHR13237 | PANTHER:PTHR13237:SF7 |
| PFAM:PF04000 | UniParc:UPI000B4829B2 | UniProt:A0A287RWW6 | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chrchr5H:-:554304071..554306181
Molecular Weight (calculated)
17000.6 Da
IEP (calculated)
8.204
GRAVY (calculated)
-0.309
Length
154 amino acids
Sequence
(BLAST)
(BLAST)
001: MTATVAGADD DRKAQALVRD DAPKLLAALK EMKDGLDLVR SKVESLTRKV RKNQLPTGDG IGYLEAKHHL LLSYCQDLVY YLLRKANGLS VDGHPVVRSL
101: VEIRLFLEKI RPIDKKMEYQ IQKLTNAADG AAAQDKVPDA EGSVLGIEEK CTIN
101: VEIRLFLEKI RPIDKKMEYQ IQKLTNAADG AAAQDKVPDA EGSVLGIEEK CTIN
001: MEEITKPVLV GIVKKEAPQL ASVLREMKNV LDVVRSKVEA LTALVKANSF PTAGGISYLE AKHLLLLSYC QDLVYYILRK AKGLSIDGHP LVRSLVEIRM
101: FLEKIRPIDK KLQYQIQKLT TAGGPVTELA HSEGKGSCEA QKSEDLSNYK PKPDLLADKE DDQEDDGVYR PPKFAPMSME DKTSKQERDA ARKEKHFFRQ
201: ATENTYMKDV LDDLEDRPEE IRDYYGVESN EQKRFMAQYE RQQKAEEELF TRAPRTKEDK KREKRLKSSS GYVFALVGN
101: FLEKIRPIDK KLQYQIQKLT TAGGPVTELA HSEGKGSCEA QKSEDLSNYK PKPDLLADKE DDQEDDGVYR PPKFAPMSME DKTSKQERDA ARKEKHFFRQ
201: ATENTYMKDV LDDLEDRPEE IRDYYGVESN EQKRFMAQYE RQQKAEEELF TRAPRTKEDK KREKRLKSSS GYVFALVGN
Arabidopsis Description
AT1G07840 protein [Source:UniProtKB/TrEMBL;Acc:Q93ZQ9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.