Factsheet for VIT_18s0001g07750.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_15s0046g02660.t01	Wine grape	nucleus	80.94	81.96
PGSC0003DMT400024201	Potato	cytosol	56.56	69.62
Solyc04g076560.2.1	Tomato	nucleus	67.81	69.33
PGSC0003DMT400022451	Potato	nucleus	67.5	68.57
KRH62262	Soybean	nucleus	58.12	58.68
KRH52980	Soybean	nucleus	57.81	58.36
HORVU3Hr1G067740.1	Barley	cytosol	17.81	55.88
Bra018680.1-P	Field mustard	nucleus	54.06	55.81
GSMUA_Achr4P33490_001	Banana	nucleus	58.44	55.16
CDX93614	Canola	nucleus	51.88	53.21
AT1G07840.2	Thale cress	nucleus	51.56	52.88
HORVU5Hr1G077970.1	Barley	cytosol	25.0	51.95
Zm00001d012087_P005	Maize	nucleus	48.44	46.69
EES04083	Sorghum	nucleus	46.88	45.05
TraesCS5B01G296000.1	Wheat	nucleus	45.62	44.38
TraesCS5D01G303800.1	Wheat	nucleus	45.31	44.34
CDX95119	Canola	plastid	51.56	44.12
Zm00001d046836_P003	Maize	nucleus	45.62	44.11
TraesCS5A01G296700.1	Wheat	nucleus	44.69	43.73
HORVU5Hr1G078110.2	Barley	nucleus, plastid	45.0	37.5
TraesCS3A01G436800.1	Wheat	nucleus	18.12	29.29
HORVU3Hr1G095480.13	Barley	nucleus	9.06	27.36
Zm00001d019592_P001	Maize	nucleus	7.19	26.74
Zm00001d026099_P002	Maize	endoplasmic reticulum, extracellular, vacuole	17.19	21.4
VIT_05s0094g00440.t01	Wine grape	nucleus	18.44	8.49

Protein Annotations

EntrezGene:100262552	wikigene:100262552	MapMan:35.2	EMBL:AM452363	ProteinID:CAN72154	ProteinID:CAN72154.1
ProteinID:CBI19287	ProteinID:CBI19287.3	ncoils:Coil	UniProt:E0CNQ9	EMBL:FN595227	GO:GO:0000462
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0032040	EntrezGene:LOC100262552	wikigene:LOC100262552
PFAM:PF04000	PANTHER:PTHR13237	PANTHER:PTHR13237:SF7	InterPro:Sas10/Utp3/C1D	UniParc:UPI0001BE1687	ArrayExpress:VIT_18s0001g07750
EnsemblPlantsGene:VIT_18s0001g07750	EnsemblPlants:VIT_18s0001g07750.t01	RefSeq:XP_002283732	RefSeq:XP_002283732.2	RefSeq:XP_010664428.1	SEG:seg

Description

No Description!

Coordinates

chr18:+:6198935..6201264

Molecular Weight (calculated)

36978.4 Da

IEP (calculated)

9.901

GRAVY (calculated)

-0.901

Length

320 amino acids

Sequence
(BLAST)

001: MEEDAKNNEI IRKEASHLAA VLKEMKEGLD AVRGKVQALT AKVKADHFPT ADGMSYLEAK HLLLINYCQS LVYYLLRKAK GFSIEGHPVV RSLVEMRLFL
101: EKIRPIDKKL QYQIQKLTRV TGNAVEKVGP SEKDSETPNT EDLLKYRPNP DMLVSKTDTT FEDGVGPVGV YRPPKFAPTS MEEDKISKHE KNALRKEKET
201: VRQARQSTYV RELMDDLEGR PEEVREIVGT ESRELIRYKE KMEQRARQEE ELFTRAPLTR MEKKKEKHLR KSRNGLLGLT DSFYDEIKTL PLEEDFGEKT
301: TGFNNSSSGG RKFKKRKRRN

Best Arabidopsis Sequence Match ( AT1G07840.2 )
(BLAST)

001: MEEITKPVLV GIVKKEAPQL ASVLREMKNV LDVVRSKVEA LTALVKANSF PTAGGISYLE AKHLLLLSYC QDLVYYILRK AKGLSIDGHP LVRSLVEIRM
101: FLEKIRPIDK KLQYQIQKLT TAGGPVTELA HSEGKGSCEA QKSEDLSNYK PKPDLLADKE DDQEDDGVYR PPKFAPMSME DKTSKQERDA ARKEKHFFRQ
201: ATENTYMKDV LDDLEDRPEE IRDYYGVESN EQKRFMAQYE RQQKAEEELF TRAPRTKEDK KREKRLKSSS GLHELTENFY DDIKFLDKDG EKPRSFGRNK
301: RGGPFKKRKT RH

Arabidopsis Description

AT1G07840 protein [Source:UniProtKB/TrEMBL;Acc:Q93ZQ9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.