Factsheet for Solyc04g076560.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400022451	Potato	nucleus	96.49	95.87
PGSC0003DMT400024201	Potato	cytosol	77.32	93.08
VIT_15s0046g02660.t01	Wine grape	nucleus	69.65	68.99
VIT_18s0001g07750.t01	Wine grape	nucleus	69.33	67.81
HORVU3Hr1G067740.1	Barley	cytosol	19.17	58.82
KRH62262	Soybean	nucleus	58.47	57.73
KRH52980	Soybean	nucleus	57.51	56.78
HORVU5Hr1G077970.1	Barley	cytosol	26.52	53.9
Bra018680.1-P	Field mustard	nucleus	53.04	53.55
AT1G07840.2	Thale cress	nucleus	53.35	53.53
CDX93614	Canola	nucleus	53.04	53.21
GSMUA_Achr4P33490_001	Banana	nucleus	56.23	51.92
Zm00001d012087_P005	Maize	nucleus	48.24	45.48
CDX95119	Canola	plastid	53.35	44.65
EES04083	Sorghum	nucleus	47.28	44.44
TraesCS5B01G296000.1	Wheat	nucleus	45.69	43.47
TraesCS5D01G303800.1	Wheat	nucleus	45.37	43.43
TraesCS5A01G296700.1	Wheat	nucleus	44.73	42.81
Zm00001d046836_P003	Maize	nucleus	45.05	42.6
HORVU5Hr1G078110.2	Barley	nucleus, plastid	45.05	36.72
TraesCS3A01G436800.1	Wheat	nucleus	17.89	28.28
Zm00001d019592_P001	Maize	nucleus	7.67	27.91
HORVU3Hr1G095480.13	Barley	nucleus	8.63	25.47
Zm00001d026099_P002	Maize	endoplasmic reticulum, extracellular, vacuole	16.29	19.84
Solyc11g072390.1.1	Tomato	nucleus	20.45	9.82
Solyc11g072320.1.1	Tomato	nucleus	20.13	9.01

Protein Annotations

EnsemblPlants:Solyc04g076560.2.1	EnsemblPlantsGene:Solyc04g076560.2	GO:GO:0000462	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005730	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0032040	InterPro:Sas10/Utp3/C1D	ncoils:Coil	PANTHER:PTHR13237	PANTHER:PTHR13237:SF7	PFAM:PF04000
SEG:seg	UniParc:UPI0002765E85	UniProt:K4BU94	MapMan:35.2	:	:

Description

No Description!

Coordinates

chr4:+:61468869..61472737

Molecular Weight (calculated)

36019.5 Da

IEP (calculated)

10.080

GRAVY (calculated)

-0.864

Length

313 amino acids

Sequence
(BLAST)

001: MASVETSQRI SRQAPQLVTV LKEMKAGLDT VSLKVQALTA KVKADHFPTA DGISYLETKH LLLLNYCQSL VYYLLRKAKG LSIEGHPVVR SLVEMRLFLE
101: KIRPIDKKLQ YQIQKLTRDS DTASEKSVIS EKGTDTQKED LLKYRPKPDM LVSKTSNTAE DGVYRPPKFA PASMGEEKMS KQERNELRRE KERLRNAKQS
201: PYMIDLLNDL EGRPEEVREV VGSESRELTN YMAKMEERAK REEEAFDRAP LTKLEKKKMK HLKKSRNGLL GLTDSFYDEI KSLPLGEPVS EQSENFEKGG
301: TEIKQQKKRK RRN

Best Arabidopsis Sequence Match ( AT1G07840.2 )
(BLAST)

001: MEEITKPVLV GIVKKEAPQL ASVLREMKNV LDVVRSKVEA LTALVKANSF PTAGGISYLE AKHLLLLSYC QDLVYYILRK AKGLSIDGHP LVRSLVEIRM
101: FLEKIRPIDK KLQYQIQKLT TAGGPVTELA HSEGKGSCEA QKSEDLSNYK PKPDLLADKE DDQEDDGVYR PPKFAPMSME DKTSKQERDA ARKEKHFFRQ
201: ATENTYMKDV LDDLEDRPEE IRDYYGVESN EQKRFMAQYE RQQKAEEELF TRAPRTKEDK KREKRLKSSS GLHELTENFY DDIKFLDKDG EKPRSFGRNK
301: RGGPFKKRKT RH

Arabidopsis Description

AT1G07840 protein [Source:UniProtKB/TrEMBL;Acc:Q93ZQ9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.