Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc11g072320.1.1 | Tomato | nucleus | 92.79 | 86.55 |
| VIT_05s0094g00440.t01 | Wine grape | nucleus | 53.68 | 50.36 |
| GSMUA_Achr6P08480_001 | Banana | nucleus | 44.63 | 44.02 |
| Bra000317.1-P | Field mustard | nucleus | 42.48 | 42.48 |
| KRH50217 | Soybean | cytosol, nucleus, plastid | 43.4 | 42.37 |
| CDX83470 | Canola | nucleus | 42.18 | 42.24 |
| AT2G43650.1 | Thale cress | nucleus | 42.18 | 42.05 |
| KRH71214 | Soybean | nucleus | 44.02 | 40.08 |
| CDY44246 | Canola | nucleus | 40.34 | 39.2 |
| Os01t0104800-01 | Rice | nucleus | 36.5 | 36.9 |
| KXG25675 | Sorghum | nucleus | 34.82 | 35.86 |
| Zm00001d031326_P003 | Maize | plasma membrane | 34.51 | 35.55 |
| HORVU7Hr1G092560.2 | Barley | mitochondrion | 34.97 | 34.7 |
| TraesCS7B01G293400.1 | Wheat | mitochondrion | 34.51 | 34.25 |
| TraesCS7A01G391500.1 | Wheat | mitochondrion | 34.2 | 34.05 |
| TraesCS7D01G387100.1 | Wheat | mitochondrion | 34.05 | 33.95 |
| TraesCS5A01G398400.1 | Wheat | mitochondrion | 16.72 | 24.17 |
| Solyc04g076560.2.1 | Tomato | nucleus | 9.82 | 20.45 |
Protein Annotations
| MapMan:35.2 | ncoils:Coil | GO:GO:0000462 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005730 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0032040 | UniProt:K4DAU6 | PFAM:PF04000 | PFAM:PF09368 | PANTHER:PTHR13237 | PANTHER:PTHR13237:SF8 |
| InterPro:Sas10/Utp3/C1D | InterPro:Sas10_C_dom | EnsemblPlantsGene:Solyc11g072390.1 | EnsemblPlants:Solyc11g072390.1.1 | UniParc:UPI0002769CAB | SEG:seg |
Description
No Description!
Coordinates
chr11:+:55565452..55573927
Molecular Weight (calculated)
73833.3 Da
IEP (calculated)
4.762
GRAVY (calculated)
-1.008
Length
652 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKKSGKFKK KENNSSKKSK SDFYNEDDDM MNDAIDVFHE KRDIIPLNVN EDSAESDEDN EHPVYDLKED EDEEDEDDDF DDAELTGLGA KIARTQKYLQ
101: ATMGGVEDEM HDEAEQEKEE ASLWGRAKKS YYQNKENVEE SSDEDLIAEE EAEVLRMQQK KAKSLSAADF GIEDDELTFE EILVQGKPGS AVSADEEAKN
201: ETVTAYEEVQ KDLNALTKEE QMDVVYSSAP ELVGLLSELG EAHEQLDNKV NPLFNKIDGK NMIKGGMHYI EVKKLLLLSY CQAITFYLLL KSEGQPVRDH
301: PVISRLVEIK NLLNKMKELD GYLPSKLEDL LHKNVDNITG VELVGRNLDS ESLPSSDKPS VVSTDIKEAE PQEAELVDAN GLNIQRKKES KRKRQDDQVG
401: IQSMEMLKVR ASLEEKLKQT GVLSSIARKT EKQNKRSRLL NRLLATPDDF DDDVMGAEDD RETRSLNKLS RLLTPQVARP KIISGDDDLP KRDDIGERRR
501: KHELRVLAGA GVEPTDDVNH ETGDHASDDV ATSDDSEMDS DMEFYREVEK QHSAKLAAKE KMYSRSPAML STPETVVDGK RQINYQMEKN RGLTRNRKKQ
601: DKNPRKKYRG KHEKAQKRRE GQVQKIKKPS GPYGGETTGI NVGISRSIRF KG
101: ATMGGVEDEM HDEAEQEKEE ASLWGRAKKS YYQNKENVEE SSDEDLIAEE EAEVLRMQQK KAKSLSAADF GIEDDELTFE EILVQGKPGS AVSADEEAKN
201: ETVTAYEEVQ KDLNALTKEE QMDVVYSSAP ELVGLLSELG EAHEQLDNKV NPLFNKIDGK NMIKGGMHYI EVKKLLLLSY CQAITFYLLL KSEGQPVRDH
301: PVISRLVEIK NLLNKMKELD GYLPSKLEDL LHKNVDNITG VELVGRNLDS ESLPSSDKPS VVSTDIKEAE PQEAELVDAN GLNIQRKKES KRKRQDDQVG
401: IQSMEMLKVR ASLEEKLKQT GVLSSIARKT EKQNKRSRLL NRLLATPDDF DDDVMGAEDD RETRSLNKLS RLLTPQVARP KIISGDDDLP KRDDIGERRR
501: KHELRVLAGA GVEPTDDVNH ETGDHASDDV ATSDDSEMDS DMEFYREVEK QHSAKLAAKE KMYSRSPAML STPETVVDGK RQINYQMEKN RGLTRNRKKQ
601: DKNPRKKYRG KHEKAQKRRE GQVQKIKKPS GPYGGETTGI NVGISRSIRF KG
001: MGKKGGTLKR SSKSTKTRKD IVEDQYDDEI DAFHKQRDIV PLDVNDDTDE SDEDDVQPVF DLQGVDDESE EDEDTEDEEE AENGLTAKMI RQKKYLRAKF
101: GDGDDEMADD DKDKEEDKRS TWGGRSGLYH SGDNVDFDIL SSDDEDIKAE EEEVIRLRAE QLGSITAADA GLDDDSEEDS DRELTMEEIS DKGKQATKSI
201: TDKKEKGDKD THVEEIKKDI NSLSKEEQMD VVYSSAPEIV GLLSELNDAV EELESKINPV MNKLKEGEIS LNGLARYLEV KQLLLLTYCQ SITFYLLLKS
301: EGQPIRDHPV LARLVEIKSL LDKIKELDEE LPPGFEESLA RSIANGAVQK VVKEDQLTSP VSDSVDRITQ DTAKPMKIDN AREEKKKKGE KRKHQNDLVD
401: VQSEEMLKLR AALEGKLRTN GVLGSTVSKS DKAQKRQKLA NRKLETFDDY VDDADNSTHN VTADKLTKLV STKRKPKTIS GDDDLPQRDD IGERRRKFEL
501: RVLAGAGVKS SEGDGRNKNG AFASDDEDDN DGDNNDMVDN DGESEDEFYK QVKQKQQAKR AAKAEIYSRK PHLMPSSPEH VDGKRHISNQ MVSNRGLTRQ
601: RNRDLKNPRK KYRKNYEKKV TRRKGQVRDI RKQTGPYAGE ARGINPNTSR SIRM
101: GDGDDEMADD DKDKEEDKRS TWGGRSGLYH SGDNVDFDIL SSDDEDIKAE EEEVIRLRAE QLGSITAADA GLDDDSEEDS DRELTMEEIS DKGKQATKSI
201: TDKKEKGDKD THVEEIKKDI NSLSKEEQMD VVYSSAPEIV GLLSELNDAV EELESKINPV MNKLKEGEIS LNGLARYLEV KQLLLLTYCQ SITFYLLLKS
301: EGQPIRDHPV LARLVEIKSL LDKIKELDEE LPPGFEESLA RSIANGAVQK VVKEDQLTSP VSDSVDRITQ DTAKPMKIDN AREEKKKKGE KRKHQNDLVD
401: VQSEEMLKLR AALEGKLRTN GVLGSTVSKS DKAQKRQKLA NRKLETFDDY VDDADNSTHN VTADKLTKLV STKRKPKTIS GDDDLPQRDD IGERRRKFEL
501: RVLAGAGVKS SEGDGRNKNG AFASDDEDDN DGDNNDMVDN DGESEDEFYK QVKQKQQAKR AAKAEIYSRK PHLMPSSPEH VDGKRHISNQ MVSNRGLTRQ
601: RNRDLKNPRK KYRKNYEKKV TRRKGQVRDI RKQTGPYAGE ARGINPNTSR SIRM
Arabidopsis Description
EMB2777Sas10/U3 ribonucleoprotein (Utp) family protein [Source:UniProtKB/TrEMBL;Acc:Q8L3P4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.