Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX83470 | Canola | nucleus | 85.54 | 88.17 |
| AT2G43650.1 | Thale cress | nucleus | 63.34 | 64.98 |
| CDY23385 | Canola | nucleus | 18.78 | 47.73 |
| CDY30426 | Canola | nucleus | 15.65 | 46.26 |
| VIT_05s0094g00440.t01 | Wine grape | nucleus | 44.56 | 43.02 |
| KRH50217 | Soybean | cytosol, nucleus, plastid | 40.24 | 40.42 |
| Solyc11g072390.1.1 | Tomato | nucleus | 39.2 | 40.34 |
| GSMUA_Achr6P08480_001 | Banana | nucleus | 38.15 | 38.73 |
| KRH71214 | Soybean | nucleus | 40.83 | 38.27 |
| Solyc11g072320.1.1 | Tomato | nucleus | 38.3 | 36.77 |
| KXG25675 | Sorghum | nucleus | 32.94 | 34.91 |
| Os01t0104800-01 | Rice | nucleus | 33.53 | 34.88 |
| Zm00001d031326_P003 | Maize | plasma membrane | 32.04 | 33.97 |
| CDY23387 | Canola | nucleus | 9.69 | 33.51 |
| TraesCS7B01G293400.1 | Wheat | mitochondrion | 32.49 | 33.18 |
| TraesCS7A01G391500.1 | Wheat | mitochondrion | 32.34 | 33.13 |
| HORVU7Hr1G092560.2 | Barley | mitochondrion | 32.34 | 33.03 |
| TraesCS7D01G387100.1 | Wheat | mitochondrion | 31.89 | 32.72 |
| TraesCS5A01G398400.1 | Wheat | mitochondrion | 14.9 | 22.17 |
| CDX93614 | Canola | nucleus | 8.94 | 19.23 |
| CDX95119 | Canola | plastid | 9.54 | 17.11 |
| CDX93612 | Canola | cytosol | 2.53 | 4.04 |
| CDX95118 | Canola | nucleus, peroxisome, plasma membrane, plastid | 3.13 | 3.91 |
Protein Annotations
| EnsemblPlants:CDY44246 | EnsemblPlantsGene:GSBRNA2T00079753001 | InterPro:Sas10/Utp3/C1D | InterPro:Sas10_C_dom | ncoils:Coil | PANTHER:PTHR13237 |
| PANTHER:PTHR13237:SF8 | PFAM:PF04000 | PFAM:PF09368 | ProteinID:CDY44246 | ProteinID:CDY44246.1 | SEG:seg |
| UniParc:UPI0004EDB883 | UniProt:A0A078I328 | MapMan:35.2 | : | : | : |
Description
BnaC03g24380DBnaC03g24380D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I328]
Coordinates
chrLK032583:+:179489..184594
Molecular Weight (calculated)
75555.5 Da
IEP (calculated)
4.589
GRAVY (calculated)
-1.040
Length
671 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKKGGFKKR VSKSAKPRND FVDGEYDDEI DAFHKQRDIV PLDVNDDTDD SSDEDDVQPV FDLKGVDEDE DEEDEDTEEE EEDKGLIAKM VGQNKYLKAK
101: FGAVDDEMAD DDNDQDEENK RVTWGSRKNA YMNADNVDFE NLSSDDEDLK LEEDEVLRMR AEQTGSITAA DAGLEDDSEE EESDRELTME EISVKGKKGT
201: KSITDKKEKD VEVIKKDINS LSKEEQMDVV YSSAPEIVGL LSELNDAVEE LENKINPVMS KLKEEGVPLT GGARYLEVKQ ILLLAYCQSI TFYFLLKSEG
301: QPIRDHPVLA RLVDIKALLD KIKELDGELP PGFEESLARM QKVVKEDATS SPVSASEVKI TQDTVEPVKI SKSKADTKKK GEKRKHQNDQ VDIQSEEMLK
401: LRAALEGKLR SNGVFGSAVS KPDKSQKRQK LANRKLETFD DFVDDADNST RDVPADKLTK HVSTKRKPKT VSGDDDLPQR DDIGERRRKF ELKVLAGAGV
501: KSEEDGKNES EVFGSDDDND KDDDGDNDMV DSDGESEGED EFYKQVKQNK QAKRAAKAEI YSREPSSISF EPETVDGKRV VSNAILSNRG LTRHRNKDKK
601: NPRKNYRDKY TDKVKRRKGQ VREIRKPTGS YGGEGSENLE GKATKSKDCS CCLLKLFFIC SHHSQILHAW V
101: FGAVDDEMAD DDNDQDEENK RVTWGSRKNA YMNADNVDFE NLSSDDEDLK LEEDEVLRMR AEQTGSITAA DAGLEDDSEE EESDRELTME EISVKGKKGT
201: KSITDKKEKD VEVIKKDINS LSKEEQMDVV YSSAPEIVGL LSELNDAVEE LENKINPVMS KLKEEGVPLT GGARYLEVKQ ILLLAYCQSI TFYFLLKSEG
301: QPIRDHPVLA RLVDIKALLD KIKELDGELP PGFEESLARM QKVVKEDATS SPVSASEVKI TQDTVEPVKI SKSKADTKKK GEKRKHQNDQ VDIQSEEMLK
401: LRAALEGKLR SNGVFGSAVS KPDKSQKRQK LANRKLETFD DFVDDADNST RDVPADKLTK HVSTKRKPKT VSGDDDLPQR DDIGERRRKF ELKVLAGAGV
501: KSEEDGKNES EVFGSDDDND KDDDGDNDMV DSDGESEGED EFYKQVKQNK QAKRAAKAEI YSREPSSISF EPETVDGKRV VSNAILSNRG LTRHRNKDKK
601: NPRKNYRDKY TDKVKRRKGQ VREIRKPTGS YGGEGSENLE GKATKSKDCS CCLLKLFFIC SHHSQILHAW V
001: MGKKGGTLKR SSKSTKTRKD IVEDQYDDEI DAFHKQRDIV PLDVNDDTDE SDEDDVQPVF DLQGVDDESE EDEDTEDEEE AENGLTAKMI RQKKYLRAKF
101: GDGDDEMADD DKDKEEDKRS TWGGRSGLYH SGDNVDFDIL SSDDEDIKAE EEEVIRLRAE QLGSITAADA GLDDDSEEDS DRELTMEEIS DKGKQATKSI
201: TDKKEKGDKD THVEEIKKDI NSLSKEEQMD VVYSSAPEIV GLLSELNDAV EELESKINPV MNKLKEGEIS LNGLARYLEV KQLLLLTYCQ SITFYLLLKS
301: EGQPIRDHPV LARLVEIKSL LDKIKELDEE LPPGFEESLA RSIANGAVQK VVKEDQLTSP VSDSVDRITQ DTAKPMKIDN AREEKKKKGE KRKHQNDLVD
401: VQSEEMLKLR AALEGKLRTN GVLGSTVSKS DKAQKRQKLA NRKLETFDDY VDDADNSTHN VTADKLTKLV STKRKPKTIS GDDDLPQRDD IGERRRKFEL
501: RVLAGAGVKS SEGDGRNKNG AFASDDEDDN DGDNNDMVDN DGESEDEFYK QVKQKQQAKR AAKAEIYSRK PHLMPSSPEH VDGKRHISNQ MVSNRGLTRQ
601: RNRDLKNPRK KYRKNYEKKV TRRKGQVRDI RKQTGPYAGE ARGINPNTSR SIRM
101: GDGDDEMADD DKDKEEDKRS TWGGRSGLYH SGDNVDFDIL SSDDEDIKAE EEEVIRLRAE QLGSITAADA GLDDDSEEDS DRELTMEEIS DKGKQATKSI
201: TDKKEKGDKD THVEEIKKDI NSLSKEEQMD VVYSSAPEIV GLLSELNDAV EELESKINPV MNKLKEGEIS LNGLARYLEV KQLLLLTYCQ SITFYLLLKS
301: EGQPIRDHPV LARLVEIKSL LDKIKELDEE LPPGFEESLA RSIANGAVQK VVKEDQLTSP VSDSVDRITQ DTAKPMKIDN AREEKKKKGE KRKHQNDLVD
401: VQSEEMLKLR AALEGKLRTN GVLGSTVSKS DKAQKRQKLA NRKLETFDDY VDDADNSTHN VTADKLTKLV STKRKPKTIS GDDDLPQRDD IGERRRKFEL
501: RVLAGAGVKS SEGDGRNKNG AFASDDEDDN DGDNNDMVDN DGESEDEFYK QVKQKQQAKR AAKAEIYSRK PHLMPSSPEH VDGKRHISNQ MVSNRGLTRQ
601: RNRDLKNPRK KYRKNYEKKV TRRKGQVRDI RKQTGPYAGE ARGINPNTSR SIRM
Arabidopsis Description
EMB2777Sas10/U3 ribonucleoprotein (Utp) family protein [Source:UniProtKB/TrEMBL;Acc:Q8L3P4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.