Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, plastid, nucleus, plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 3
- plasma membrane 1
- nucleus 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra018679.1-P | Field mustard | cytosol | 78.21 | 99.76 |
| CDX93612 | Canola | cytosol | 78.21 | 99.76 |
| CDY30426 | Canola | nucleus | 3.35 | 7.93 |
| CDX93614 | Canola | nucleus | 4.47 | 7.69 |
| CDY23387 | Canola | nucleus | 2.42 | 6.7 |
| CDY23385 | Canola | nucleus | 3.17 | 6.44 |
| CDX95119 | Canola | plastid | 4.47 | 6.42 |
| CDY44246 | Canola | nucleus | 3.91 | 3.13 |
| CDX83470 | Canola | nucleus | 3.72 | 3.07 |
Protein Annotations
| EnsemblPlants:CDX95118 | EnsemblPlantsGene:GSBRNA2T00100659001 | Gene3D:3.90.550.50 | GO:A0A078E6Z4 | InterPro:DUF604 | PANTHER:PTHR10811 |
| PANTHER:PTHR10811:SF27 | PFAM:PF04646 | ProteinID:CDX95118 | ProteinID:CDX95118.1 | SEG:seg | TMHMM:TMhelix |
| UniParc:UPI0004EDBAAB | MapMan:35.2 | : | : | : | : |
Description
BnaC05g05530D
Coordinates
chrLK031886:-:1256810..1259360
Molecular Weight (calculated)
61925.1 Da
IEP (calculated)
9.798
GRAVY (calculated)
-0.435
Length
537 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNSSSSKTN LSNPKNRLLE EHHHHDKLKT HSPTSRVSFL RSPLPWLFMF LFFLPLILIS TTGGGGRKTC SPTYPHLSIK DQTNSSSVLK DPEEQEEEED
101: DDVPPRVPSL YPRRPRMFNT TLDHVVFGIA ASSVLWETRK EYIKSWWRPG KTRGVVWIDK RVRTYRNEPL PLIRISQDTS RFRYTHPVGD RSAVRISRVV
201: TETLRLGLKG VRWFVMGDDD TVFVVDNVVN VLSKYDHTQF YYVGSSSEAH VQNIFFSYSM AFGGGGFAIS YALAVELSKM QDRCIQRYPG LYGSDDRIQA
301: CMTELGVPLT KEPGFHQYDV YGDLLGLLGA HPVAPLVTLH HIDVVQPIFP KMKRSRALRH LMSSAELDSA SIFQQSICYD QSRFWSISVS WGFSVQIIRG
401: IISPRELEMP SRTFLNWFRR ADYIGYAFNT RPVSRHPCQR PFVFYVNSAK YDEGRRQVIG YYNLDKTRRF PGCRWRLDSP GKIDSVVVLK RPDPLRWHKS
501: PRRDCCRVLP SRRNTTMYIW VGNCADGEIS ELEHPKQ
101: DDVPPRVPSL YPRRPRMFNT TLDHVVFGIA ASSVLWETRK EYIKSWWRPG KTRGVVWIDK RVRTYRNEPL PLIRISQDTS RFRYTHPVGD RSAVRISRVV
201: TETLRLGLKG VRWFVMGDDD TVFVVDNVVN VLSKYDHTQF YYVGSSSEAH VQNIFFSYSM AFGGGGFAIS YALAVELSKM QDRCIQRYPG LYGSDDRIQA
301: CMTELGVPLT KEPGFHQYDV YGDLLGLLGA HPVAPLVTLH HIDVVQPIFP KMKRSRALRH LMSSAELDSA SIFQQSICYD QSRFWSISVS WGFSVQIIRG
401: IISPRELEMP SRTFLNWFRR ADYIGYAFNT RPVSRHPCQR PFVFYVNSAK YDEGRRQVIG YYNLDKTRRF PGCRWRLDSP GKIDSVVVLK RPDPLRWHKS
501: PRRDCCRVLP SRRNTTMYIW VGNCADGEIS ELEHPKQ
001: MGNSSSSNTN LSNPKNILLE DHHHQRNQAQ NHSNSARTSH LSFLRSPLPW LFIFLFFLPL LLISTTGGGG SRKTCRPSSS TYSHLSLVDK ANSSSSVVPE
101: EEDDDVPPRV PALYPQRPRM FNTTLDHIVF GIAASSVLWE TRKEYIKSWW RPGKTRGVVW IDKRVRTYRN DPLPEIRISQ DTSRFRYTHP VGDRSAVRIS
201: RVVTETLRLG KKGVRWFVMG DDDTVFVVDN VVNVLSKYDH TQFYYVGSSS EAHVQNIFFS YSMAFGGGGF AISYALALEL LRMQDRCIQR YPGLYGSDDR
301: IQACMTELGV PLTKEPGFHQ YDVYGDLLGL LGAHPVAPLV SLHHIDVVQP IFPKMKRSRA LRHLMSSAVL DPASIFQQSI CYDQNRFWSI SVSWGFVVQI
401: IRGIISPREL EMPSRTFLNW FRKADYIGYA FNTRPVSRHP CQRPFVFYLN SAKYDEGRRQ VIGYYNLDKT RRIPGCRWRL DSPGKIDSVV VLKRPDPLRW
501: HKSPRRDCCR VLPSRRNQTM YIWVGNCADG EISELEHPQQ H
101: EEDDDVPPRV PALYPQRPRM FNTTLDHIVF GIAASSVLWE TRKEYIKSWW RPGKTRGVVW IDKRVRTYRN DPLPEIRISQ DTSRFRYTHP VGDRSAVRIS
201: RVVTETLRLG KKGVRWFVMG DDDTVFVVDN VVNVLSKYDH TQFYYVGSSS EAHVQNIFFS YSMAFGGGGF AISYALALEL LRMQDRCIQR YPGLYGSDDR
301: IQACMTELGV PLTKEPGFHQ YDVYGDLLGL LGAHPVAPLV SLHHIDVVQP IFPKMKRSRA LRHLMSSAVL DPASIFQQSI CYDQNRFWSI SVSWGFVVQI
401: IRGIISPREL EMPSRTFLNW FRKADYIGYA FNTRPVSRHP CQRPFVFYLN SAKYDEGRRQ VIGYYNLDKT RRIPGCRWRL DSPGKIDSVV VLKRPDPLRW
501: HKSPRRDCCR VLPSRRNQTM YIWVGNCADG EISELEHPQQ H
Arabidopsis Description
Glycosyltransferase [Source:UniProtKB/TrEMBL;Acc:F4HSH8]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.