Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY30426 | Canola | nucleus | 38.66 | 33.04 |
| AT3G28230.2 | Thale cress | nucleus | 27.32 | 30.46 |
| CDY23385 | Canola | nucleus | 39.69 | 29.17 |
| CDX83470 | Canola | nucleus | 38.14 | 11.37 |
| CDY44246 | Canola | nucleus | 33.51 | 9.69 |
| CDX93614 | Canola | nucleus | 14.43 | 8.97 |
| CDX95119 | Canola | plastid | 14.43 | 7.49 |
| CDX93612 | Canola | cytosol | 6.7 | 3.09 |
| CDX95118 | Canola | nucleus, peroxisome, plasma membrane, plastid | 6.7 | 2.42 |
Protein Annotations
| EnsemblPlants:CDY23387 | EnsemblPlantsGene:GSBRNA2T00021991001 | InterPro:Sas10_C_dom | PANTHER:PTHR13237 | PANTHER:PTHR13237:SF8 | PFAM:PF09368 |
| ProteinID:CDY23387 | ProteinID:CDY23387.1 | UniParc:UPI0004EF19D0 | UniProt:A0A078GE73 | MapMan:35.2 | : |
Description
BnaC04g49150DBnaC04g49150D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GE73]
Coordinates
chrLK032143:+:243016..246330
Molecular Weight (calculated)
22761.6 Da
IEP (calculated)
11.167
GRAVY (calculated)
-1.083
Length
194 amino acids
Sequence
(BLAST)
(BLAST)
001: MENKYSFKTS ETTINDKLSS KYHVTTIKEI QSHTYIHNKE SYANFGKPRK HILKPLTKPK HKRMKQNIQI EFHGSWSTQF ISRKSMMMTW LIVMANQKAQ
101: KMSFTNKEPS STLLLPETVD GKRLISNEIL SNRGLTRHRN KDKKNPRKNY RDKYMDKVKR RGGQVREIRK PSGSYGGEVS GINPNISHRI RIKN
101: KMSFTNKEPS STLLLPETVD GKRLISNEIL SNRGLTRHRN KDKKNPRKNY RDKYMDKVKR RGGQVREIRK PSGSYGGEVS GINPNISHRI RIKN
001: MGKKGGTLKR SSKSTKTRKD IVEDQYDDEI DAFHKQRDIV PLDVNDDTDE SDEDDVQPVF DLQGVDDESE EDEDTEDEEE AENGLTAKMI RQKKYLRAKF
101: GDGDDEMADD DKDKEEDKRS TWGGRSGLYH SGDNVDFDIL SSDDEDIKAE EEEVIRLRAE QLGSITAADA GLDDDSEEDS DRELTMEEIS DKGKQATKSI
201: TDKKEKGDKD THVEEIKKDI NSLSKEEQMD VVYSSAPEIV GLLSELNDAV EELESKINPV MNKLKEGEIS LNGLARYLEV KQLLLLTYCQ SITFYLLLKS
301: EGQPIRDHPV LARLVEIKSL LDKIKELDEE LPPGFEESLA RSIANGAVQK VVKEDQLTSP VSDSVDRITQ DTAKPMKIDN AREEKKKKGE KRKHQNDLVD
401: VQSEEMLKLR AALEGKLRTN GVLGSTVSKS DKAQKRQKLA NRKLETFDDY VDDADNSTHN VTADKLTKLV STKRKPKTIS GDDDLPQRDD IGERRRKFEL
501: RVLAGAGVKS SEGDGRNKNG AFASDDEDDN DGDNNDMVDN DGESEDEFYK QVKQKQQAKR AAKAEIYSRK PHLMPSSPEH VDGKRHISNQ MVSNRGLTRQ
601: RNRDLKNPRK KYRKNYEKKV TRRKGQVRDI RKQTGPYAGE ARGINPNTSR SIRM
101: GDGDDEMADD DKDKEEDKRS TWGGRSGLYH SGDNVDFDIL SSDDEDIKAE EEEVIRLRAE QLGSITAADA GLDDDSEEDS DRELTMEEIS DKGKQATKSI
201: TDKKEKGDKD THVEEIKKDI NSLSKEEQMD VVYSSAPEIV GLLSELNDAV EELESKINPV MNKLKEGEIS LNGLARYLEV KQLLLLTYCQ SITFYLLLKS
301: EGQPIRDHPV LARLVEIKSL LDKIKELDEE LPPGFEESLA RSIANGAVQK VVKEDQLTSP VSDSVDRITQ DTAKPMKIDN AREEKKKKGE KRKHQNDLVD
401: VQSEEMLKLR AALEGKLRTN GVLGSTVSKS DKAQKRQKLA NRKLETFDDY VDDADNSTHN VTADKLTKLV STKRKPKTIS GDDDLPQRDD IGERRRKFEL
501: RVLAGAGVKS SEGDGRNKNG AFASDDEDDN DGDNNDMVDN DGESEDEFYK QVKQKQQAKR AAKAEIYSRK PHLMPSSPEH VDGKRHISNQ MVSNRGLTRQ
601: RNRDLKNPRK KYRKNYEKKV TRRKGQVRDI RKQTGPYAGE ARGINPNTSR SIRM
Arabidopsis Description
EMB2777Sas10/U3 ribonucleoprotein (Utp) family protein [Source:UniProtKB/TrEMBL;Acc:Q8L3P4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.