Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Bra037695.1-P | Field mustard | nucleus | 86.78 | 79.44 |
CDY23385 | Canola | nucleus | 67.84 | 58.33 |
AT3G28230.2 | Thale cress | nucleus | 36.56 | 47.7 |
CDY23387 | Canola | nucleus | 33.04 | 38.66 |
CDX83470 | Canola | nucleus | 51.1 | 17.82 |
CDY44246 | Canola | nucleus | 46.26 | 15.65 |
CDX93614 | Canola | nucleus | 13.66 | 9.94 |
CDX95119 | Canola | plastid | 13.66 | 8.29 |
CDX93612 | Canola | cytosol | 7.93 | 4.28 |
CDX95118 | Canola | nucleus, peroxisome, plasma membrane, plastid | 7.93 | 3.35 |
Protein Annotations
EnsemblPlants:CDY30426 | EnsemblPlantsGene:GSBRNA2T00045126001 | InterPro:Sas10_C_dom | PANTHER:PTHR13237 | PANTHER:PTHR13237:SF8 | PFAM:PF09368 |
ProteinID:CDY30426 | ProteinID:CDY30426.1 | SEG:seg | UniParc:UPI0004EF06C2 | UniProt:A0A078GY38 | MapMan:35.2 |
Description
BnaA04g25270DBnaA04g25270D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GY38]
Coordinates
chrLK032253:+:237320..238550
Molecular Weight (calculated)
25922.3 Da
IEP (calculated)
11.182
GRAVY (calculated)
-1.180
Length
227 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSKVGFQKR GSVSTKSRKE IDEHEIELQP ESLATSIADG TVQNVVKDTV EPVKINKSTR KKGEKRKHQQ NDQVSEEMLK LRAALQGKLR SNGVFGSTVS
101: KSDKAQKRQK RRKIELKFYK QVKQKKEAKR AAKAEIYSRE PSSNLLLLPE SVQGKRLISK EILSNRGLTR HRNKDKKNPR KNYRDKYTDK VKRRGGQVRE
201: IRKPSGPYGG EALGINSNIS HSIRIKY
101: KSDKAQKRQK RRKIELKFYK QVKQKKEAKR AAKAEIYSRE PSSNLLLLPE SVQGKRLISK EILSNRGLTR HRNKDKKNPR KNYRDKYTDK VKRRGGQVRE
201: IRKPSGPYGG EALGINSNIS HSIRIKY
001: MKIDNAREEK KKKGQKRKHQ QNDQADMEML KLRAALEGKH RSNGSTVLKS AKAQKRQKSE DSEDEFYRQV KQKQEAKKAA KAEIYSRKPY LIPSSPDLVD
101: GRRLISNQMA SNRGLTRKRN KDHKNPRKKY RDQHKKIVIN RKGQVRDIRT QVGPYAGETR GINPYTSRSI RIKN
101: GRRLISNQMA SNRGLTRKRN KDHKNPRKKY RDQHKKIVIN RKGQVRDIRT QVGPYAGETR GINPYTSRSI RIKN
Arabidopsis Description
Something about silencing protein [Source:UniProtKB/TrEMBL;Acc:F4IZ10]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.