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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra037695.1-P Field mustard nucleus 86.78 79.44
CDY23385 Canola nucleus 67.84 58.33
AT3G28230.2 Thale cress nucleus 36.56 47.7
CDY23387 Canola nucleus 33.04 38.66
CDX83470 Canola nucleus 51.1 17.82
CDY44246 Canola nucleus 46.26 15.65
CDX93614 Canola nucleus 13.66 9.94
CDX95119 Canola plastid 13.66 8.29
CDX93612 Canola cytosol 7.93 4.28
CDX95118 Canola nucleus, peroxisome, plasma membrane, plastid 7.93 3.35
Protein Annotations
EnsemblPlants:CDY30426EnsemblPlantsGene:GSBRNA2T00045126001InterPro:Sas10_C_domPANTHER:PTHR13237PANTHER:PTHR13237:SF8PFAM:PF09368
ProteinID:CDY30426ProteinID:CDY30426.1SEG:segUniParc:UPI0004EF06C2UniProt:A0A078GY38MapMan:35.2
Description
BnaA04g25270DBnaA04g25270D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GY38]
Coordinates
chrLK032253:+:237320..238550
Molecular Weight (calculated)
25922.3 Da
IEP (calculated)
11.182
GRAVY (calculated)
-1.180
Length
227 amino acids
Sequence
(BLAST)
001: MGSKVGFQKR GSVSTKSRKE IDEHEIELQP ESLATSIADG TVQNVVKDTV EPVKINKSTR KKGEKRKHQQ NDQVSEEMLK LRAALQGKLR SNGVFGSTVS
101: KSDKAQKRQK RRKIELKFYK QVKQKKEAKR AAKAEIYSRE PSSNLLLLPE SVQGKRLISK EILSNRGLTR HRNKDKKNPR KNYRDKYTDK VKRRGGQVRE
201: IRKPSGPYGG EALGINSNIS HSIRIKY
Best Arabidopsis Sequence Match ( AT3G28230.2 )
(BLAST)
001: MKIDNAREEK KKKGQKRKHQ QNDQADMEML KLRAALEGKH RSNGSTVLKS AKAQKRQKSE DSEDEFYRQV KQKQEAKKAA KAEIYSRKPY LIPSSPDLVD
101: GRRLISNQMA SNRGLTRKRN KDHKNPRKKY RDQHKKIVIN RKGQVRDIRT QVGPYAGETR GINPYTSRSI RIKN
Arabidopsis Description
Something about silencing protein [Source:UniProtKB/TrEMBL;Acc:F4IZ10]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.