CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra018680.1-P	Field mustard	nucleus	88.78	89.35
CDX95119	Canola	plastid	95.51	79.68
AT1G07840.2	Thale cress	nucleus	76.28	76.28
HORVU3Hr1G067740.1	Barley	cytosol	19.23	58.82
PGSC0003DMT400024201	Potato	cytosol	46.79	56.15
VIT_15s0046g02660.t01	Wine grape	nucleus	55.13	54.43
HORVU5Hr1G077970.1	Barley	cytosol	26.28	53.25
Solyc04g076560.2.1	Tomato	nucleus	53.21	53.04
VIT_18s0001g07750.t01	Wine grape	nucleus	53.21	51.88
PGSC0003DMT400022451	Potato	nucleus	51.6	51.11
KRH52980	Soybean	nucleus	49.04	48.27
KRH62262	Soybean	nucleus	49.04	48.27
TraesCS5D01G303800.1	Wheat	nucleus	48.08	45.87
GSMUA_Achr4P33490_001	Banana	nucleus	49.68	45.72
TraesCS5B01G296000.1	Wheat	nucleus	47.76	45.29
TraesCS5A01G296700.1	Wheat	nucleus	47.44	45.26
Zm00001d012087_P005	Maize	nucleus	46.15	43.37
EES04083	Sorghum	nucleus	45.51	42.64
Zm00001d046836_P003	Maize	nucleus	45.19	42.6
HORVU5Hr1G078110.2	Barley	nucleus, plastid	47.76	38.8
TraesCS3A01G436800.1	Wheat	nucleus	20.83	32.83
HORVU3Hr1G095480.13	Barley	nucleus	9.94	29.25
Zm00001d019592_P001	Maize	nucleus	8.01	29.07
Zm00001d026099_P002	Maize	endoplasmic reticulum, extracellular, vacuole	17.63	21.4
CDY23387	Canola	nucleus	8.97	14.43
CDY23385	Canola	nucleus	11.86	14.02
CDY30426	Canola	nucleus	9.94	13.66
CDX83470	Canola	nucleus	18.91	9.06
CDY44246	Canola	nucleus	19.23	8.94
CDX93612	Canola	cytosol	7.69	5.7
CDX95118	Canola	nucleus, peroxisome, plasma membrane, plastid	7.69	4.47

Protein Annotations

EnsemblPlants:CDX93614	EnsemblPlantsGene:GSBRNA2T00156294001	InterPro:Sas10/Utp3/C1D	ncoils:Coil	PANTHER:PTHR13237	PANTHER:PTHR13237:SF7
PFAM:PF04000	ProteinID:CDX93614	ProteinID:CDX93614.1	SEG:seg	UniParc:UPI0004EDF255	MapMan:35.2

Description

BnaA06g04340D

Coordinates

chrLK031876:-:942550..945078

Molecular Weight (calculated)

36055.0 Da

IEP (calculated)

8.865

GRAVY (calculated)

-0.972

Length

312 amino acids

Sequence
(BLAST)

001: MMEEIKKPGL VETIKREAPQ LATVLREMKE GLDVVRSKVE ALTAKVKADS YPTADGMSYL EAKHLLLLSY CQCLVYYLLR KAKGFSIDGH PVVRSLVEIR
101: MFLEKIRPID KKLQYQIQKL TTAGASVTEQ TLSEGKEAEK SEDVSNYKPK PDLLADKMED EPLDGVYRPP KFAPMSMDDK TSKQERDAAR KEKHFLRQAT
201: ENTYMKDVLD ELEDRPEEIR DWHGAESKEQ RKFIAQYERQ QEVEEELFAR APRTKEDKKR EKRLKSRSGL HGLTESFDDE FKFLDEDGEK QSSFGGSGRK
301: SGGRSKRRKT RH

Best Arabidopsis Sequence Match ( AT1G07840.2 )
(BLAST)

001: MEEITKPVLV GIVKKEAPQL ASVLREMKNV LDVVRSKVEA LTALVKANSF PTAGGISYLE AKHLLLLSYC QDLVYYILRK AKGLSIDGHP LVRSLVEIRM
101: FLEKIRPIDK KLQYQIQKLT TAGGPVTELA HSEGKGSCEA QKSEDLSNYK PKPDLLADKE DDQEDDGVYR PPKFAPMSME DKTSKQERDA ARKEKHFFRQ
201: ATENTYMKDV LDDLEDRPEE IRDYYGVESN EQKRFMAQYE RQQKAEEELF TRAPRTKEDK KREKRLKSSS GLHELTENFY DDIKFLDKDG EKPRSFGRNK
301: RGGPFKKRKT RH

Arabidopsis Description

AT1G07840 protein [Source:UniProtKB/TrEMBL;Acc:Q93ZQ9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.