CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d019592_P001	Maize	nucleus	23.72	91.86
Zm00001d012087_P005	Maize	nucleus	87.09	87.35
Zm00001d046836_P003	Maize	nucleus	83.78	84.29
TraesCS5D01G303800.1	Wheat	nucleus	67.57	68.81
TraesCS5B01G296000.1	Wheat	nucleus	67.87	68.69
TraesCS5A01G296700.1	Wheat	nucleus	66.97	68.2
HORVU5Hr1G077970.1	Barley	cytosol	31.23	67.53
HORVU3Hr1G067740.1	Barley	cytosol	19.52	63.73
HORVU5Hr1G078110.2	Barley	nucleus, plastid	66.07	57.29
HORVU3Hr1G095480.13	Barley	nucleus	17.72	55.66
TraesCS3A01G436800.1	Wheat	nucleus	30.93	52.02
PGSC0003DMT400024201	Potato	cytosol	40.24	51.54
Zm00001d026099_P002	Maize	endoplasmic reticulum, extracellular, vacuole	37.54	48.64
GSMUA_Achr4P33490_001	Banana	nucleus	48.65	47.79
VIT_15s0046g02660.t01	Wine grape	nucleus	45.35	47.78
Solyc04g076560.2.1	Tomato	nucleus	44.44	47.28
VIT_18s0001g07750.t01	Wine grape	nucleus	45.05	46.88
PGSC0003DMT400022451	Potato	nucleus	43.84	46.35
AT1G07840.2	Thale cress	nucleus	42.64	45.51
CDX93614	Canola	nucleus	42.64	45.51
Bra018680.1-P	Field mustard	nucleus	42.34	45.48
KRH52980	Soybean	nucleus	42.04	44.16
KRH62262	Soybean	nucleus	41.44	43.53
CDX95119	Canola	plastid	43.24	38.5
KXG25675	Sorghum	nucleus	19.82	10.43

Protein Annotations

MapMan:35.2	EntrezGene:8056153	UniProt:C5XFL2	EnsemblPlants:EES04083	ProteinID:EES04083	ProteinID:EES04083.1
GO:GO:0000462	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0032040	PFAM:PF04000
PANTHER:PTHR13237	PANTHER:PTHR13237:SF7	EnsemblPlantsGene:SORBI_3003G397700	InterPro:Sas10/Utp3/C1D	unigene:Sbi.5229	UniParc:UPI0001A85534
RefSeq:XP_002458963.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:70722504..70725550

Molecular Weight (calculated)

37468.4 Da

IEP (calculated)

9.077

GRAVY (calculated)

-0.993

Length

333 amino acids

Sequence
(BLAST)

001: MAAASAAAAA EANGESKDEF LIRDDAPGLL AALKEMKDGL DLVRGKVEAI TRKVKENQLP TANGIGYLDA KNQLLLGYCQ DIVYYLLRKA KGLSVDGHPV
101: VRSLVEIRLF LEKIRPIDKK AEYQIQKLTN AADNAIAREK TGNAEAKGKG EHSDEDDPLK YRPNPDMMDT KAGPDGQDTD GVYRPPKFMP TSVDDEEKRR
201: KKDSRRDKAL ARVAIENPYI KEIIDDAADR PEEWKETVGD ESREFGRYMR QREEQEKQEE ELFTRAPVTK RDKQIEKRIR RQLHGLGGLT DGFDLGMNML
301: IGGDKEDDGG SSKSHGKSGH RKKHLKSSKR KRH

Best Arabidopsis Sequence Match ( AT1G07840.2 )
(BLAST)

001: MEEITKPVLV GIVKKEAPQL ASVLREMKNV LDVVRSKVEA LTALVKANSF PTAGGISYLE AKHLLLLSYC QDLVYYILRK AKGLSIDGHP LVRSLVEIRM
101: FLEKIRPIDK KLQYQIQKLT TAGGPVTELA HSEGKGSCEA QKSEDLSNYK PKPDLLADKE DDQEDDGVYR PPKFAPMSME DKTSKQERDA ARKEKHFFRQ
201: ATENTYMKDV LDDLEDRPEE IRDYYGVESN EQKRFMAQYE RQQKAEEELF TRAPRTKEDK KREKRLKSSS GLHELTENFY DDIKFLDKDG EKPRSFGRNK
301: RGGPFKKRKT RH

Arabidopsis Description

AT1G07840 protein [Source:UniProtKB/TrEMBL;Acc:Q93ZQ9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.