Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc04g076560.2.1 | Tomato | nucleus | 93.08 | 77.32 |
| PGSC0003DMT400022451 | Potato | nucleus | 92.31 | 76.19 |
| HORVU3Hr1G067740.1 | Barley | cytosol | 23.08 | 58.82 |
| VIT_15s0046g02660.t01 | Wine grape | nucleus | 70.0 | 57.59 |
| VIT_18s0001g07750.t01 | Wine grape | nucleus | 69.62 | 56.56 |
| HORVU5Hr1G077970.1 | Barley | cytosol | 31.92 | 53.9 |
| KRH62262 | Soybean | nucleus | 60.0 | 49.21 |
| KRH52980 | Soybean | nucleus | 59.62 | 48.9 |
| AT1G07840.2 | Thale cress | nucleus | 57.31 | 47.76 |
| Bra018680.1-P | Field mustard | nucleus | 56.92 | 47.74 |
| CDX93614 | Canola | nucleus | 56.15 | 46.79 |
| GSMUA_Achr4P33490_001 | Banana | nucleus | 57.69 | 44.25 |
| Zm00001d012087_P005 | Maize | nucleus | 53.08 | 41.57 |
| EES04083 | Sorghum | nucleus | 51.54 | 40.24 |
| CDX95119 | Canola | plastid | 56.54 | 39.3 |
| TraesCS5D01G303800.1 | Wheat | nucleus | 49.23 | 39.14 |
| TraesCS5B01G296000.1 | Wheat | nucleus | 49.23 | 38.91 |
| Zm00001d046836_P003 | Maize | nucleus | 49.23 | 38.67 |
| TraesCS5A01G296700.1 | Wheat | nucleus | 48.46 | 38.53 |
| HORVU5Hr1G078110.2 | Barley | nucleus, plastid | 48.85 | 33.07 |
| TraesCS3A01G436800.1 | Wheat | nucleus | 15.0 | 19.7 |
| Zm00001d026099_P002 | Maize | endoplasmic reticulum, extracellular, vacuole | 14.62 | 14.79 |
| HORVU3Hr1G095480.13 | Barley | nucleus | 5.77 | 14.15 |
| Zm00001d019592_P001 | Maize | nucleus | 4.62 | 13.95 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400024201 | EnsemblPlantsGene:PGSC0003DMG400009352 | InterPro:Sas10/Utp3/C1D | ncoils:Coil | PANTHER:PTHR13237 | PANTHER:PTHR13237:SF7 |
| PFAM:PF04000 | PGSC:PGSC0003DMG400009352 | SEG:seg | UniParc:UPI0002953481 | UniProt:M1AJN2 | MapMan:35.2 |
Description
Something about silencing protein sas10 [Source:PGSC_GENE;Acc:PGSC0003DMG400009352]
Coordinates
chr4:+:65266424..65270591
Molecular Weight (calculated)
29968.3 Da
IEP (calculated)
10.004
GRAVY (calculated)
-0.787
Length
260 amino acids
Sequence
(BLAST)
(BLAST)
001: MASLETSQRI SRQAPQLVTV LKEMKAGLDT VSLKVQALTA KVKADHFPTA DGISYLETKH LLLLNYCQSL VYYLLRKAKG LSIEGHPVVR SLVEMRLFLE
101: KIRPIDKKLQ YQIQKLTRDS DTASEKSVIS EKGTDTQKED LLKYRPKPDM LVHKTSNTAE DGANVYRPPK FAPTSMGEEK MSKQERNELR REKERLRNAK
201: QSPYMIDLLN DLEGRPEEVR EVVGSESREL TNYMAKMKER AKREEEAFDR APLTKLEKRK
101: KIRPIDKKLQ YQIQKLTRDS DTASEKSVIS EKGTDTQKED LLKYRPKPDM LVHKTSNTAE DGANVYRPPK FAPTSMGEEK MSKQERNELR REKERLRNAK
201: QSPYMIDLLN DLEGRPEEVR EVVGSESREL TNYMAKMKER AKREEEAFDR APLTKLEKRK
001: MEEITKPVLV GIVKKEAPQL ASVLREMKNV LDVVRSKVEA LTALVKANSF PTAGGISYLE AKHLLLLSYC QDLVYYILRK AKGLSIDGHP LVRSLVEIRM
101: FLEKIRPIDK KLQYQIQKLT TAGGPVTELA HSEGKGSCEA QKSEDLSNYK PKPDLLADKE DDQEDDGVYR PPKFAPMSME DKTSKQERDA ARKEKHFFRQ
201: ATENTYMKDV LDDLEDRPEE IRDYYGVESN EQKRFMAQYE RQQKAEEELF TRAPRTKEDK KREKRLKSSS GYVFALVGN
101: FLEKIRPIDK KLQYQIQKLT TAGGPVTELA HSEGKGSCEA QKSEDLSNYK PKPDLLADKE DDQEDDGVYR PPKFAPMSME DKTSKQERDA ARKEKHFFRQ
201: ATENTYMKDV LDDLEDRPEE IRDYYGVESN EQKRFMAQYE RQQKAEEELF TRAPRTKEDK KREKRLKSSS GYVFALVGN
Arabidopsis Description
AT1G07840 protein [Source:UniProtKB/TrEMBL;Acc:Q93ZQ9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.