Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
VIT_15s0046g02660.t01 | Wine grape | nucleus | 58.11 | 62.34 |
VIT_18s0001g07750.t01 | Wine grape | nucleus | 55.16 | 58.44 |
PGSC0003DMT400024201 | Potato | cytosol | 44.25 | 57.69 |
HORVU3Hr1G067740.1 | Barley | cytosol | 17.11 | 56.86 |
HORVU5Hr1G077970.1 | Barley | cytosol | 25.66 | 56.49 |
Solyc04g076560.2.1 | Tomato | nucleus | 51.92 | 56.23 |
KRH52980 | Soybean | nucleus | 52.51 | 56.15 |
KRH62262 | Soybean | nucleus | 52.51 | 56.15 |
PGSC0003DMT400022451 | Potato | nucleus | 50.74 | 54.6 |
CDX93614 | Canola | nucleus | 45.72 | 49.68 |
AT1G07840.2 | Thale cress | nucleus | 44.84 | 48.72 |
EES04083 | Sorghum | nucleus | 47.79 | 48.65 |
Zm00001d012087_P005 | Maize | nucleus | 47.49 | 48.49 |
TraesCS5D01G303800.1 | Wheat | nucleus | 46.31 | 48.01 |
Bra018680.1-P | Field mustard | nucleus | 43.66 | 47.74 |
TraesCS5B01G296000.1 | Wheat | nucleus | 46.31 | 47.72 |
TraesCS5A01G296700.1 | Wheat | nucleus | 45.72 | 47.4 |
Zm00001d046836_P003 | Maize | nucleus | 45.13 | 46.22 |
CDX95119 | Canola | plastid | 46.31 | 41.98 |
HORVU5Hr1G078110.2 | Barley | nucleus, plastid | 46.61 | 41.15 |
TraesCS3A01G436800.1 | Wheat | nucleus | 18.88 | 32.32 |
Zm00001d019592_P001 | Maize | nucleus | 7.67 | 30.23 |
HORVU3Hr1G095480.13 | Barley | nucleus | 9.14 | 29.25 |
Zm00001d026099_P002 | Maize | endoplasmic reticulum, extracellular, vacuole | 17.7 | 23.35 |
GSMUA_Achr6P08480_001 | Banana | nucleus | 22.12 | 11.35 |
Protein Annotations
EnsemblPlants:GSMUA_Achr4P33490_001 | EnsemblPlants:GSMUA_Achr4T33490_001 | EnsemblPlantsGene:GSMUA_Achr4G33490_001 | InterPro:Sas10/Utp3/C1D | PANTHER:PTHR13237 | PANTHER:PTHR13237:SF7 |
PFAM:PF04000 | SEG:seg | UniParc:UPI000295219B | UniProt:M0SUB1 | MapMan:35.2 | : |
Description
sas10/Utp3 family protein [Source:GMGC_GENE;Acc:GSMUA_Achr4G33490_001]
Coordinates
chr4:+:29888629..29892233
Molecular Weight (calculated)
39248.1 Da
IEP (calculated)
9.727
GRAVY (calculated)
-0.927
Length
339 amino acids
Sequence
(BLAST)
(BLAST)
001: MTGRRLALGG IMSDHHESRS GGEESLALPL TRDSPQLVAL LKEMKDGLDV VRSKLDVLTQ KVVRENQFPT SEGMSYLDAK YLLLLSYCQS IVYYLLRKAK
101: GLSVQDHPVV KSLVEIRLFL EKIRPIDKKL EYQTQKLIRA ASNFVSEKIS TPDDKEKSFQ DEEDPLKYRP NPGMLVSKSE PGAQDAGGVY RPPRFAPTSM
201: DEDKISKQEK QALRREKALL RQAKQSTYVK ELMDDFEDRP EELRENIGAE SRELTRYVAK REERARQEEE LFTRAPVAKR DKQIEKHMKK SRNGLLGLTD
301: GFYDEIRMLP MEEKENDETS SHMNNDKQGK KFKRRKRKH
101: GLSVQDHPVV KSLVEIRLFL EKIRPIDKKL EYQTQKLIRA ASNFVSEKIS TPDDKEKSFQ DEEDPLKYRP NPGMLVSKSE PGAQDAGGVY RPPRFAPTSM
201: DEDKISKQEK QALRREKALL RQAKQSTYVK ELMDDFEDRP EELRENIGAE SRELTRYVAK REERARQEEE LFTRAPVAKR DKQIEKHMKK SRNGLLGLTD
301: GFYDEIRMLP MEEKENDETS SHMNNDKQGK KFKRRKRKH
001: MEEITKPVLV GIVKKEAPQL ASVLREMKNV LDVVRSKVEA LTALVKANSF PTAGGISYLE AKHLLLLSYC QDLVYYILRK AKGLSIDGHP LVRSLVEIRM
101: FLEKIRPIDK KLQYQIQKLT TAGGPVTELA HSEGKGSCEA QKSEDLSNYK PKPDLLADKE DDQEDDGVYR PPKFAPMSME DKTSKQERDA ARKEKHFFRQ
201: ATENTYMKDV LDDLEDRPEE IRDYYGVESN EQKRFMAQYE RQQKAEEELF TRAPRTKEDK KREKRLKSSS GLHELTENFY DDIKFLDKDG EKPRSFGRNK
301: RGGPFKKRKT RH
101: FLEKIRPIDK KLQYQIQKLT TAGGPVTELA HSEGKGSCEA QKSEDLSNYK PKPDLLADKE DDQEDDGVYR PPKFAPMSME DKTSKQERDA ARKEKHFFRQ
201: ATENTYMKDV LDDLEDRPEE IRDYYGVESN EQKRFMAQYE RQQKAEEELF TRAPRTKEDK KREKRLKSSS GLHELTENFY DDIKFLDKDG EKPRSFGRNK
301: RGGPFKKRKT RH
Arabidopsis Description
AT1G07840 protein [Source:UniProtKB/TrEMBL;Acc:Q93ZQ9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.