Factsheet for VIT_15s0046g02660.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0001g07750.t01	Wine grape	nucleus	81.96	80.94
PGSC0003DMT400024201	Potato	cytosol	57.59	70.0
Solyc04g076560.2.1	Tomato	nucleus	68.99	69.65
PGSC0003DMT400022451	Potato	nucleus	67.72	67.94
KRH62262	Soybean	nucleus	59.81	59.62
KRH52980	Soybean	nucleus	59.18	58.99
GSMUA_Achr4P33490_001	Banana	nucleus	62.34	58.11
HORVU3Hr1G067740.1	Barley	cytosol	18.67	57.84
AT1G07840.2	Thale cress	nucleus	55.38	56.09
CDX93614	Canola	nucleus	54.43	55.13
Bra018680.1-P	Field mustard	nucleus	53.8	54.84
HORVU5Hr1G077970.1	Barley	cytosol	26.58	54.55
CDX95119	Canola	plastid	54.43	45.99
Zm00001d012087_P005	Maize	nucleus	48.1	45.78
EES04083	Sorghum	nucleus	47.78	45.35
TraesCS5D01G303800.1	Wheat	nucleus	46.84	45.26
TraesCS5B01G296000.1	Wheat	nucleus	46.84	44.98
TraesCS5A01G296700.1	Wheat	nucleus	46.2	44.65
Zm00001d046836_P003	Maize	nucleus	45.89	43.81
HORVU5Hr1G078110.2	Barley	nucleus, plastid	46.2	38.02
TraesCS3A01G436800.1	Wheat	nucleus	18.04	28.79
Zm00001d019592_P001	Maize	nucleus	7.28	26.74
HORVU3Hr1G095480.13	Barley	nucleus	8.54	25.47
Zm00001d026099_P002	Maize	endoplasmic reticulum, extracellular, vacuole	17.41	21.4
VIT_05s0094g00440.t01	Wine grape	nucleus	19.62	8.92

Protein Annotations

EntrezGene:100243158	wikigene:100243158	MapMan:35.2	EMBL:AM442256	ProteinID:CAN69547	ProteinID:CAN69547.1
ProteinID:CCB62421	ProteinID:CCB62421.1	ncoils:Coil	UniProt:F6I625	EMBL:FN596755	GO:GO:0000462
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0032040	EntrezGene:LOC100243158	wikigene:LOC100243158
PFAM:PF04000	PANTHER:PTHR13237	PANTHER:PTHR13237:SF7	InterPro:Sas10/Utp3/C1D	UniParc:UPI0001984EB3	ArrayExpress:VIT_15s0046g02660
EnsemblPlantsGene:VIT_15s0046g02660	EnsemblPlants:VIT_15s0046g02660.t01	RefSeq:XP_002274529	RefSeq:XP_002274529.1	RefSeq:XP_010661786.1	RefSeq:XP_019081000.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr15:+:19408867..19414610

Molecular Weight (calculated)

36525.1 Da

IEP (calculated)

9.909

GRAVY (calculated)

-0.877

Length

316 amino acids

Sequence
(BLAST)

001: MEGETTNIER VRKEASQLVA VLKEMKEGLD AVRSKVQALT AKVKADHFPT ADGMSYLEAK HLLLLDYCQS LVYYLLRKAK GLSIEGHPVV HSLVEIRLFL
101: EKIRPIDKKL QYQIQKLTRV TGNAVEKVSS GEKDSETQNT EDLLKYRPNP DMLISKTDMT SEGGVGGVYR PPKFAPASME EDKMSKQERN VLRKEKETLR
201: QARQSAYVRE LMDDLEGRPE EVREIVGTES RELIRYKEKM EQRARQEEEL FTRAPLTRTE KKKEKHLRKS RNGLLGLTDS FYDEIKTLPM EEDFGEKMSG
301: FNNSGGRKFK KRKRKH

Best Arabidopsis Sequence Match ( AT1G07840.2 )
(BLAST)

001: MEEITKPVLV GIVKKEAPQL ASVLREMKNV LDVVRSKVEA LTALVKANSF PTAGGISYLE AKHLLLLSYC QDLVYYILRK AKGLSIDGHP LVRSLVEIRM
101: FLEKIRPIDK KLQYQIQKLT TAGGPVTELA HSEGKGSCEA QKSEDLSNYK PKPDLLADKE DDQEDDGVYR PPKFAPMSME DKTSKQERDA ARKEKHFFRQ
201: ATENTYMKDV LDDLEDRPEE IRDYYGVESN EQKRFMAQYE RQQKAEEELF TRAPRTKEDK KREKRLKSSS GLHELTENFY DDIKFLDKDG EKPRSFGRNK
301: RGGPFKKRKT RH

Arabidopsis Description

AT1G07840 protein [Source:UniProtKB/TrEMBL;Acc:Q93ZQ9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.