CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH52980	Soybean	nucleus	93.38	93.38
PGSC0003DMT400024201	Potato	cytosol	49.21	60.0
VIT_15s0046g02660.t01	Wine grape	nucleus	59.62	59.81
Solyc04g076560.2.1	Tomato	nucleus	57.73	58.47
VIT_18s0001g07750.t01	Wine grape	nucleus	58.68	58.12
PGSC0003DMT400022451	Potato	nucleus	56.78	57.14
HORVU3Hr1G067740.1	Barley	cytosol	17.67	54.9
GSMUA_Achr4P33490_001	Banana	nucleus	56.15	52.51
HORVU5Hr1G077970.1	Barley	cytosol	24.61	50.65
AT1G07840.2	Thale cress	nucleus	48.58	49.36
CDX93614	Canola	nucleus	48.27	49.04
Bra018680.1-P	Field mustard	nucleus	47.63	48.71
Zm00001d012087_P005	Maize	nucleus	44.48	42.47
TraesCS5D01G303800.1	Wheat	nucleus	42.9	41.59
EES04083	Sorghum	nucleus	43.53	41.44
CDX95119	Canola	plastid	48.58	41.18
TraesCS5A01G296700.1	Wheat	nucleus	42.27	40.98
TraesCS5B01G296000.1	Wheat	nucleus	42.27	40.73
Zm00001d046836_P003	Maize	nucleus	41.64	39.88
HORVU5Hr1G078110.2	Barley	nucleus, plastid	41.96	34.64
Zm00001d019592_P001	Maize	nucleus	7.89	29.07
HORVU3Hr1G095480.13	Barley	nucleus	9.15	27.36
TraesCS3A01G436800.1	Wheat	nucleus	16.4	26.26
Zm00001d026099_P002	Maize	endoplasmic reticulum, extracellular, vacuole	17.03	21.01
KRH50217	Soybean	cytosol, nucleus, plastid	17.35	8.23
KRH71214	Soybean	nucleus	18.3	8.1

Protein Annotations

EntrezGene:100811655	MapMan:35.2	EMBL:ACUP02002229	EnsemblPlantsGene:GLYMA_04G096700	GO:GO:0000462	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0032040	UniProt:K7KJ67	ProteinID:KRH62261.1	EnsemblPlants:KRH62262
ProteinID:KRH62262	ProteinID:KRH62262.1	PFAM:PF04000	PANTHER:PTHR13237	PANTHER:PTHR13237:SF7	InterPro:Sas10/Utp3/C1D
UniParc:UPI0001BA6497	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:8743666..8747107

Molecular Weight (calculated)

37006.2 Da

IEP (calculated)

9.685

GRAVY (calculated)

-0.968

Length

317 amino acids

Sequence
(BLAST)

001: MENIANHNDD SKQKEAPQLA ALLKEMKEGL DTVRHKIQSL TAMVKEGLYP TADGFSYLEV KNLLLLNYCQ SLVYYLLRKA KGLSIEDHPV VRSVVEIRLF
101: LEKIRPIDKK QQYQIQKLMQ ASENAIRSDI LNKEPVASNK SEDASKYRPN PDMLVSKVDL TSQADNEYYQ PVKFAPTSMD LEKSSKHERN ALRREKEILK
201: QAKQSDYLRT LMNDMEERPE EIRDFEGASR EVDRYIAKMD ERARQEEELF TRVPLTKQER KREKYLKKSR NGLQGLTESF YDEIKTLPFE DKTGEQVVGS
301: SNGSRTNNRL KKRKRKH

Best Arabidopsis Sequence Match ( AT1G07840.2 )
(BLAST)

001: MEEITKPVLV GIVKKEAPQL ASVLREMKNV LDVVRSKVEA LTALVKANSF PTAGGISYLE AKHLLLLSYC QDLVYYILRK AKGLSIDGHP LVRSLVEIRM
101: FLEKIRPIDK KLQYQIQKLT TAGGPVTELA HSEGKGSCEA QKSEDLSNYK PKPDLLADKE DDQEDDGVYR PPKFAPMSME DKTSKQERDA ARKEKHFFRQ
201: ATENTYMKDV LDDLEDRPEE IRDYYGVESN EQKRFMAQYE RQQKAEEELF TRAPRTKEDK KREKRLKSSS GLHELTENFY DDIKFLDKDG EKPRSFGRNK
301: RGGPFKKRKT RH

Arabidopsis Description

AT1G07840 protein [Source:UniProtKB/TrEMBL;Acc:Q93ZQ9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.