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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • cytosol 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
nucleus: 21132161
endoplasmic reticulum: 27224218
nucleus: 27291164
nucleus: 28499913
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27291164 doi
X Yin, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH50217 Soybean cytosol, nucleus, plastid 83.66 89.67
VIT_05s0094g00440.t01 Wine grape nucleus 45.95 47.34
Solyc11g072390.1.1 Tomato nucleus 40.08 44.02
AT2G43650.1 Thale cress nucleus 39.8 43.58
CDX83470 Canola nucleus 38.13 41.94
Bra000317.1-P Field mustard nucleus 37.71 41.41
CDY44246 Canola nucleus 38.27 40.83
Solyc11g072320.1.1 Tomato nucleus 39.53 40.49
GSMUA_Achr6P08480_001 Banana nucleus 36.87 39.94
KXG25675 Sorghum nucleus 31.98 36.18
Os01t0104800-01 Rice nucleus 32.54 36.12
Zm00001d031326_P003 Maize plasma membrane 31.84 36.02
HORVU7Hr1G092560.2 Barley mitochondrion 30.73 33.49
TraesCS7B01G293400.1 Wheat mitochondrion 30.31 33.03
TraesCS7D01G387100.1 Wheat mitochondrion 30.17 33.03
TraesCS7A01G391500.1 Wheat mitochondrion 30.03 32.82
TraesCS5A01G398400.1 Wheat mitochondrion 15.36 24.39
KRH62262 Soybean nucleus 8.1 18.3
KRH52980 Soybean nucleus 8.1 18.3
Protein Annotations
MapMan:35.2EMBL:ACUP02000880ncoils:CoilEnsemblPlantsGene:GLYMA_02G137100GO:GO:0000462GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0005730GO:GO:0006139GO:GO:0008150
GO:GO:0008152GO:GO:0009987GO:GO:0032040UniProt:I1JEZ1EnsemblPlants:KRH71214ProteinID:KRH71214
ProteinID:KRH71214.1PFAM:PF04000PFAM:PF09368PANTHER:PTHR13237PANTHER:PTHR13237:SF8InterPro:Sas10/Utp3/C1D
InterPro:Sas10_C_domUniParc:UPI0002954BA7SEG:seg:::
Description
hypothetical protein
Coordinates
chr2:+:14181768..14187505
Molecular Weight (calculated)
81269.3 Da
IEP (calculated)
4.607
GRAVY (calculated)
-1.035
Length
716 amino acids
Sequence
(BLAST)
001: MEEEYPLSLL SLALTPHLTR RCETRECEEE TKVQFWGLAV KNRTHTMGKK RGTSYQKKDA KSSKSKTSSR HGAYSSDDMD DDIDTFHKQR DIVPLDINDD
101: AEESEDEELP IFDVQDIDED EDDEDEDDGE DDDDDDDRDD VVAKMIRQRK YLQGKFGGGD DEMNDADDDD EDEEDYKLTL GGKKFSHGAE NRNFELQSSD
201: DEAPKEEEEL ALQIQREKAK SLTMEDYDLV DISEDKDNEK LTLKDASDKG SEAIKSLDRD INFSVDELNA LSKEEQMNVL YRSAPELVDW LSELNEAHRQ
301: LECEINPFLS KVKKGEIVMK GEVRYFELKQ LILLSYCQAI TFYLLLKSEG QPVYDHPIIA RLEEIKKLLD QIKQLDTKLP FELEDILKGN NGLETVVNSD
401: NENAPTTADS IIKNQEQPLV SAKSTEETVP NKQFEMQKLE TSKNSVQKTR KVKPQKDHIG AQSLEMLKVR ASLEEKLKNK GLYSSIAPKP SNALKRLKPV
501: NGMLETYDDF NDDTMDANGE ARLINGSVSK RVSQFLNANM KKPKVVSGDD DLPKRDDIGE RRRKHELRVL AGAGIRTEDD DDDQMADLGP NEVTDEEEDG
601: GSGDSENEFY KQVEQLRAAK LAAKAETYSR NSSVSSLPET VEGKRHISSQ IEKNRGLTRN RNKAKKNPRK NYKLKHQKAV KNRKGQVQSI KRPTAPYGGE
701: SSGINAAISR SIRFKS
Best Arabidopsis Sequence Match ( AT2G43650.1 )
(BLAST)
001: MGKKGGTLKR SSKSTKTRKD IVEDQYDDEI DAFHKQRDIV PLDVNDDTDE SDEDDVQPVF DLQGVDDESE EDEDTEDEEE AENGLTAKMI RQKKYLRAKF
101: GDGDDEMADD DKDKEEDKRS TWGGRSGLYH SGDNVDFDIL SSDDEDIKAE EEEVIRLRAE QLGSITAADA GLDDDSEEDS DRELTMEEIS DKGKQATKSI
201: TDKKEKGDKD THVEEIKKDI NSLSKEEQMD VVYSSAPEIV GLLSELNDAV EELESKINPV MNKLKEGEIS LNGLARYLEV KQLLLLTYCQ SITFYLLLKS
301: EGQPIRDHPV LARLVEIKSL LDKIKELDEE LPPGFEESLA RSIANGAVQK VVKEDQLTSP VSDSVDRITQ DTAKPMKIDN AREEKKKKGE KRKHQNDLVD
401: VQSEEMLKLR AALEGKLRTN GVLGSTVSKS DKAQKRQKLA NRKLETFDDY VDDADNSTHN VTADKLTKLV STKRKPKTIS GDDDLPQRDD IGERRRKFEL
501: RVLAGAGVKS SEGDGRNKNG AFASDDEDDN DGDNNDMVDN DGESEDEFYK QVKQKQQAKR AAKAEIYSRK PHLMPSSPEH VDGKRHISNQ MVSNRGLTRQ
601: RNRDLKNPRK KYRKNYEKKV TRRKGQVRDI RKQTGPYAGE ARGINPNTSR SIRM
Arabidopsis Description
EMB2777Sas10/U3 ribonucleoprotein (Utp) family protein [Source:UniProtKB/TrEMBL;Acc:Q8L3P4]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.