Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
21132161
endoplasmic reticulum: 27224218 nucleus: 27291164 nucleus: 28499913 |
msms PMID:
21132161
doi
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
KRH50217 | Soybean | cytosol, nucleus, plastid | 83.66 | 89.67 |
VIT_05s0094g00440.t01 | Wine grape | nucleus | 45.95 | 47.34 |
Solyc11g072390.1.1 | Tomato | nucleus | 40.08 | 44.02 |
AT2G43650.1 | Thale cress | nucleus | 39.8 | 43.58 |
CDX83470 | Canola | nucleus | 38.13 | 41.94 |
Bra000317.1-P | Field mustard | nucleus | 37.71 | 41.41 |
CDY44246 | Canola | nucleus | 38.27 | 40.83 |
Solyc11g072320.1.1 | Tomato | nucleus | 39.53 | 40.49 |
GSMUA_Achr6P08480_001 | Banana | nucleus | 36.87 | 39.94 |
KXG25675 | Sorghum | nucleus | 31.98 | 36.18 |
Os01t0104800-01 | Rice | nucleus | 32.54 | 36.12 |
Zm00001d031326_P003 | Maize | plasma membrane | 31.84 | 36.02 |
HORVU7Hr1G092560.2 | Barley | mitochondrion | 30.73 | 33.49 |
TraesCS7B01G293400.1 | Wheat | mitochondrion | 30.31 | 33.03 |
TraesCS7D01G387100.1 | Wheat | mitochondrion | 30.17 | 33.03 |
TraesCS7A01G391500.1 | Wheat | mitochondrion | 30.03 | 32.82 |
TraesCS5A01G398400.1 | Wheat | mitochondrion | 15.36 | 24.39 |
KRH62262 | Soybean | nucleus | 8.1 | 18.3 |
KRH52980 | Soybean | nucleus | 8.1 | 18.3 |
Protein Annotations
MapMan:35.2 | EMBL:ACUP02000880 | ncoils:Coil | EnsemblPlantsGene:GLYMA_02G137100 | GO:GO:0000462 | GO:GO:0005575 |
GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005730 | GO:GO:0006139 | GO:GO:0008150 |
GO:GO:0008152 | GO:GO:0009987 | GO:GO:0032040 | UniProt:I1JEZ1 | EnsemblPlants:KRH71214 | ProteinID:KRH71214 |
ProteinID:KRH71214.1 | PFAM:PF04000 | PFAM:PF09368 | PANTHER:PTHR13237 | PANTHER:PTHR13237:SF8 | InterPro:Sas10/Utp3/C1D |
InterPro:Sas10_C_dom | UniParc:UPI0002954BA7 | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr2:+:14181768..14187505
Molecular Weight (calculated)
81269.3 Da
IEP (calculated)
4.607
GRAVY (calculated)
-1.035
Length
716 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEEYPLSLL SLALTPHLTR RCETRECEEE TKVQFWGLAV KNRTHTMGKK RGTSYQKKDA KSSKSKTSSR HGAYSSDDMD DDIDTFHKQR DIVPLDINDD
101: AEESEDEELP IFDVQDIDED EDDEDEDDGE DDDDDDDRDD VVAKMIRQRK YLQGKFGGGD DEMNDADDDD EDEEDYKLTL GGKKFSHGAE NRNFELQSSD
201: DEAPKEEEEL ALQIQREKAK SLTMEDYDLV DISEDKDNEK LTLKDASDKG SEAIKSLDRD INFSVDELNA LSKEEQMNVL YRSAPELVDW LSELNEAHRQ
301: LECEINPFLS KVKKGEIVMK GEVRYFELKQ LILLSYCQAI TFYLLLKSEG QPVYDHPIIA RLEEIKKLLD QIKQLDTKLP FELEDILKGN NGLETVVNSD
401: NENAPTTADS IIKNQEQPLV SAKSTEETVP NKQFEMQKLE TSKNSVQKTR KVKPQKDHIG AQSLEMLKVR ASLEEKLKNK GLYSSIAPKP SNALKRLKPV
501: NGMLETYDDF NDDTMDANGE ARLINGSVSK RVSQFLNANM KKPKVVSGDD DLPKRDDIGE RRRKHELRVL AGAGIRTEDD DDDQMADLGP NEVTDEEEDG
601: GSGDSENEFY KQVEQLRAAK LAAKAETYSR NSSVSSLPET VEGKRHISSQ IEKNRGLTRN RNKAKKNPRK NYKLKHQKAV KNRKGQVQSI KRPTAPYGGE
701: SSGINAAISR SIRFKS
101: AEESEDEELP IFDVQDIDED EDDEDEDDGE DDDDDDDRDD VVAKMIRQRK YLQGKFGGGD DEMNDADDDD EDEEDYKLTL GGKKFSHGAE NRNFELQSSD
201: DEAPKEEEEL ALQIQREKAK SLTMEDYDLV DISEDKDNEK LTLKDASDKG SEAIKSLDRD INFSVDELNA LSKEEQMNVL YRSAPELVDW LSELNEAHRQ
301: LECEINPFLS KVKKGEIVMK GEVRYFELKQ LILLSYCQAI TFYLLLKSEG QPVYDHPIIA RLEEIKKLLD QIKQLDTKLP FELEDILKGN NGLETVVNSD
401: NENAPTTADS IIKNQEQPLV SAKSTEETVP NKQFEMQKLE TSKNSVQKTR KVKPQKDHIG AQSLEMLKVR ASLEEKLKNK GLYSSIAPKP SNALKRLKPV
501: NGMLETYDDF NDDTMDANGE ARLINGSVSK RVSQFLNANM KKPKVVSGDD DLPKRDDIGE RRRKHELRVL AGAGIRTEDD DDDQMADLGP NEVTDEEEDG
601: GSGDSENEFY KQVEQLRAAK LAAKAETYSR NSSVSSLPET VEGKRHISSQ IEKNRGLTRN RNKAKKNPRK NYKLKHQKAV KNRKGQVQSI KRPTAPYGGE
701: SSGINAAISR SIRFKS
001: MGKKGGTLKR SSKSTKTRKD IVEDQYDDEI DAFHKQRDIV PLDVNDDTDE SDEDDVQPVF DLQGVDDESE EDEDTEDEEE AENGLTAKMI RQKKYLRAKF
101: GDGDDEMADD DKDKEEDKRS TWGGRSGLYH SGDNVDFDIL SSDDEDIKAE EEEVIRLRAE QLGSITAADA GLDDDSEEDS DRELTMEEIS DKGKQATKSI
201: TDKKEKGDKD THVEEIKKDI NSLSKEEQMD VVYSSAPEIV GLLSELNDAV EELESKINPV MNKLKEGEIS LNGLARYLEV KQLLLLTYCQ SITFYLLLKS
301: EGQPIRDHPV LARLVEIKSL LDKIKELDEE LPPGFEESLA RSIANGAVQK VVKEDQLTSP VSDSVDRITQ DTAKPMKIDN AREEKKKKGE KRKHQNDLVD
401: VQSEEMLKLR AALEGKLRTN GVLGSTVSKS DKAQKRQKLA NRKLETFDDY VDDADNSTHN VTADKLTKLV STKRKPKTIS GDDDLPQRDD IGERRRKFEL
501: RVLAGAGVKS SEGDGRNKNG AFASDDEDDN DGDNNDMVDN DGESEDEFYK QVKQKQQAKR AAKAEIYSRK PHLMPSSPEH VDGKRHISNQ MVSNRGLTRQ
601: RNRDLKNPRK KYRKNYEKKV TRRKGQVRDI RKQTGPYAGE ARGINPNTSR SIRM
101: GDGDDEMADD DKDKEEDKRS TWGGRSGLYH SGDNVDFDIL SSDDEDIKAE EEEVIRLRAE QLGSITAADA GLDDDSEEDS DRELTMEEIS DKGKQATKSI
201: TDKKEKGDKD THVEEIKKDI NSLSKEEQMD VVYSSAPEIV GLLSELNDAV EELESKINPV MNKLKEGEIS LNGLARYLEV KQLLLLTYCQ SITFYLLLKS
301: EGQPIRDHPV LARLVEIKSL LDKIKELDEE LPPGFEESLA RSIANGAVQK VVKEDQLTSP VSDSVDRITQ DTAKPMKIDN AREEKKKKGE KRKHQNDLVD
401: VQSEEMLKLR AALEGKLRTN GVLGSTVSKS DKAQKRQKLA NRKLETFDDY VDDADNSTHN VTADKLTKLV STKRKPKTIS GDDDLPQRDD IGERRRKFEL
501: RVLAGAGVKS SEGDGRNKNG AFASDDEDDN DGDNNDMVDN DGESEDEFYK QVKQKQQAKR AAKAEIYSRK PHLMPSSPEH VDGKRHISNQ MVSNRGLTRQ
601: RNRDLKNPRK KYRKNYEKKV TRRKGQVRDI RKQTGPYAGE ARGINPNTSR SIRM
Arabidopsis Description
EMB2777Sas10/U3 ribonucleoprotein (Utp) family protein [Source:UniProtKB/TrEMBL;Acc:Q8L3P4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.