Factsheet for Os01t0104800-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

nucleus: 23777608
nucleus: 26035336

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

msms PMID: 26035336 doi

M Li, X Yin, K Sakata, P Yang, S Komatsu

§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG25675	Sorghum	nucleus	59.38	60.51
Zm00001d031326_P003	Maize	plasma membrane	58.91	60.03
HORVU7Hr1G092560.2	Barley	mitochondrion	57.21	56.16
TraesCS7B01G293400.1	Wheat	mitochondrion	56.74	55.71
TraesCS7D01G387100.1	Wheat	mitochondrion	56.12	55.35
TraesCS7A01G391500.1	Wheat	mitochondrion	54.73	53.89
GSMUA_Achr6P08480_001	Banana	nucleus	39.22	38.28
CDX83470	Canola	nucleus	36.9	36.56
Solyc11g072390.1.1	Tomato	nucleus	36.9	36.5
VIT_05s0094g00440.t01	Wine grape	nucleus	39.22	36.4
Bra000317.1-P	Field mustard	nucleus	36.74	36.35
AT2G43650.1	Thale cress	nucleus	35.35	34.86
Solyc11g072320.1.1	Tomato	nucleus	36.74	33.91
KRH50217	Soybean	cytosol, nucleus, plastid	34.73	33.53
CDY44246	Canola	nucleus	34.88	33.53
KRH71214	Soybean	nucleus	36.12	32.54

Protein Annotations

MapMan:35.2	EntrezGene:4326297	EMBL:AK067602	ProteinID:BAD44841.1	ProteinID:BAD44871.1	ProteinID:BAF03681.1
ProteinID:BAS69960.1	GO:GO:0000462	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005730	GO:GO:0006139	GO:GO:0006364	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0032040	EnsemblPlantsGene:Os01g0104800	EnsemblPlants:Os01t0104800-01	PFAM:PF04000	PFAM:PF09368	PANTHER:PTHR13237
PANTHER:PTHR13237:SF8	UniProt:Q657Z6	InterPro:Sas10/Utp3/C1D	InterPro:Sas10_C_dom	UniParc:UPI000043A0E3	RefSeq:XP_015622163.1
SEG:seg	:	:	:	:	:

Description

Sas10/Utp3 family protein. (Os01t0104800-01);Hypothetical conserved gene. (Os01t0104800-02)

Coordinates

chr1:+:261530..268145

Molecular Weight (calculated)

73293.4 Da

IEP (calculated)

5.139

GRAVY (calculated)

-1.129

Length

645 amino acids

Sequence
(BLAST)

001: MGKEKGKGKW KRPPTVKPPV MAASASDDDE IDAFHKHRDM IPLHDHDMES EDDLEHPVFD LEGISENETD DSEGDEDGNM DKAAYDEWDD KFIAKLKRAE
101: RAVKQIAGGD DSMDEHEDDH KDKNSWGRGK NAYYDAGEQS GDDEDDYEEA RRIQKEEESK LSMQDFGLED GESDEEDRAI KASNHQVKVP DGEHSFETYV
201: KMKEEFAVLS RDEKMGVLDS SAPELVGLLS ELKDAHEELM AIGPVTNEVT AGQSKDKGKM QPLEVKRACL AAYCQAITFY LLMKAEGLSV QDHPVIARLV
301: EIKSVVEKMK HANVNFPRQK EDSDDYCMPD SNIMDVADMI SLDKKNIYSN LLLRDKGVEV AELTKNDHSN KDHHEIAKRK GKDEHIGSQS LEMLKVRATL
401: EERLKEKGLY NLTRLKRKKV SNTRTTNRSD LQTLDDFDDE VLKNTQAIKP SKVLVAAAKS NKNKFVSGDD ELPKRDDIGE RRRKHELRVL ARVGASTLED
501: DDLPEEDDHT EERPNQLSEE NGSDDDIGPS ESEDEFYKDV KRRRTEKLSS KEQKYSPNPV IESLEEETEG DGKRKISYQM EKNRGLTRSR NKKLKNPRKK
601: YRVKHQTKLV KRGGQVRGVK KPSGPYGGEM SGINPNVSRS VRFKG

Best Arabidopsis Sequence Match ( AT2G43650.1 )
(BLAST)

001: MGKKGGTLKR SSKSTKTRKD IVEDQYDDEI DAFHKQRDIV PLDVNDDTDE SDEDDVQPVF DLQGVDDESE EDEDTEDEEE AENGLTAKMI RQKKYLRAKF
101: GDGDDEMADD DKDKEEDKRS TWGGRSGLYH SGDNVDFDIL SSDDEDIKAE EEEVIRLRAE QLGSITAADA GLDDDSEEDS DRELTMEEIS DKGKQATKSI
201: TDKKEKGDKD THVEEIKKDI NSLSKEEQMD VVYSSAPEIV GLLSELNDAV EELESKINPV MNKLKEGEIS LNGLARYLEV KQLLLLTYCQ SITFYLLLKS
301: EGQPIRDHPV LARLVEIKSL LDKIKELDEE LPPGFEESLA RSIANGAVQK VVKEDQLTSP VSDSVDRITQ DTAKPMKIDN AREEKKKKGE KRKHQNDLVD
401: VQSEEMLKLR AALEGKLRTN GVLGSTVSKS DKAQKRQKLA NRKLETFDDY VDDADNSTHN VTADKLTKLV STKRKPKTIS GDDDLPQRDD IGERRRKFEL
501: RVLAGAGVKS SEGDGRNKNG AFASDDEDDN DGDNNDMVDN DGESEDEFYK QVKQKQQAKR AAKAEIYSRK PHLMPSSPEH VDGKRHISNQ MVSNRGLTRQ
601: RNRDLKNPRK KYRKNYEKKV TRRKGQVRDI RKQTGPYAGE ARGINPNTSR SIRM

Arabidopsis Description

EMB2777Sas10/U3 ribonucleoprotein (Utp) family protein [Source:UniProtKB/TrEMBL;Acc:Q8L3P4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.