Factsheet for Solyc11g072320.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
mitochondrion 3
nucleus 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

nucleus: 25464976
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g072390.1.1	Tomato	nucleus	86.55	92.79
VIT_05s0094g00440.t01	Wine grape	nucleus	48.93	49.21
GSMUA_Achr6P08480_001	Banana	nucleus	41.06	43.42
KRH50217	Soybean	cytosol, nucleus, plastid	40.2	42.07
AT2G43650.1	Thale cress	nucleus	38.63	41.28
Bra000317.1-P	Field mustard	nucleus	38.34	41.1
CDX83470	Canola	nucleus	38.05	40.86
KRH71214	Soybean	nucleus	40.49	39.53
CDY44246	Canola	nucleus	36.77	38.3
Os01t0104800-01	Rice	nucleus	33.91	36.74
KXG25675	Sorghum	nucleus	32.05	35.39
Zm00001d031326_P003	Maize	plasma membrane	31.76	35.07
HORVU7Hr1G092560.2	Barley	mitochondrion	31.76	33.79
TraesCS7A01G391500.1	Wheat	mitochondrion	31.04	33.13
TraesCS7B01G293400.1	Wheat	mitochondrion	31.04	33.03
TraesCS7D01G387100.1	Wheat	mitochondrion	30.62	32.72
TraesCS5A01G398400.1	Wheat	mitochondrion	15.31	23.73
Solyc04g076560.2.1	Tomato	nucleus	9.01	20.13

Protein Annotations

MapMan:35.2	ncoils:Coil	GO:GO:0000462	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005730	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0032040	UniProt:K4DAT9	PFAM:PF04000	PFAM:PF09368	PANTHER:PTHR13237	PANTHER:PTHR13237:SF8
InterPro:Sas10/Utp3/C1D	InterPro:Sas10_C_dom	EnsemblPlantsGene:Solyc11g072320.1	EnsemblPlants:Solyc11g072320.1.1	UniParc:UPI0002769B23	SEG:seg

Description

No Description!

Coordinates

chr11:+:55516818..55528293

Molecular Weight (calculated)

78683.3 Da

IEP (calculated)

4.977

GRAVY (calculated)

-0.928

Length

699 amino acids

Sequence
(BLAST)

001: MGSKLQIPNK STNFNRRLLL RAATALLPPV SASPDAAHLF TSLYSLRMGK KSGKFKKKEN NPPKKSKNDF YNEDDDMMND AIDVFHEKRD IIPLNVNEDS
101: AESDEDNEHP VYDLKEDEDE EDEDDDFDDA ELTGLGAKIA RTQKYLQATM GGVEDEMHDE TEQEKEEKSM WGRGKNIYYQ NKETVEESSD EDLIAEEEAE
201: VLRMQQKKAK SLSAADFGIE DDELTFEEIL VQGKPGSAVS ADGEAKNETD TAYEEVQKNL NALTKEEQMD VVYSSAPELV GLLSELGEAL EQLDNKVNPL
301: FNKITGNSMI KGGMHYIEVK KLLLLSYCQA ISFYLILKSE GQPVHDHPVI SRLVEIKNLL NKMTELDGYL PSKLEDLLHK NVDNVTGVKL LGRNLDSESF
401: PISDKPSVVS TDIQEAEPHE AELAEASGVN SLRKKESKRK RQDDQVGIQS MEMLKVRASL EEKLKQTGVL SSIARKNEKR NKRSRLLNGM LATPDDFDDD
501: SMAAGDDRET RSLNKLSRLL TPQVARPKII SGDDDLPKRD DIGERRRKHE LRVLAGAGVE PTNDVNDEPG DHASDDAATS DNSELDSDME FYREVEKQHS
601: AKLAAKEKMY SRSPAMLSTP ETVVDGKRQI NYQMEKNRGL TRNRKKQDKN PRKKYRGKHE KAQKRREGQV QKIKKPSGPY GGETTGINVG ISRSIRFKG

Best Arabidopsis Sequence Match ( AT2G43650.1 )
(BLAST)

001: MGKKGGTLKR SSKSTKTRKD IVEDQYDDEI DAFHKQRDIV PLDVNDDTDE SDEDDVQPVF DLQGVDDESE EDEDTEDEEE AENGLTAKMI RQKKYLRAKF
101: GDGDDEMADD DKDKEEDKRS TWGGRSGLYH SGDNVDFDIL SSDDEDIKAE EEEVIRLRAE QLGSITAADA GLDDDSEEDS DRELTMEEIS DKGKQATKSI
201: TDKKEKGDKD THVEEIKKDI NSLSKEEQMD VVYSSAPEIV GLLSELNDAV EELESKINPV MNKLKEGEIS LNGLARYLEV KQLLLLTYCQ SITFYLLLKS
301: EGQPIRDHPV LARLVEIKSL LDKIKELDEE LPPGFEESLA RSIANGAVQK VVKEDQLTSP VSDSVDRITQ DTAKPMKIDN AREEKKKKGE KRKHQNDLVD
401: VQSEEMLKLR AALEGKLRTN GVLGSTVSKS DKAQKRQKLA NRKLETFDDY VDDADNSTHN VTADKLTKLV STKRKPKTIS GDDDLPQRDD IGERRRKFEL
501: RVLAGAGVKS SEGDGRNKNG AFASDDEDDN DGDNNDMVDN DGESEDEFYK QVKQKQQAKR AAKAEIYSRK PHLMPSSPEH VDGKRHISNQ MVSNRGLTRQ
601: RNRDLKNPRK KYRKNYEKKV TRRKGQVRDI RKQTGPYAGE ARGINPNTSR SIRM

Arabidopsis Description

EMB2777Sas10/U3 ribonucleoprotein (Utp) family protein [Source:UniProtKB/TrEMBL;Acc:Q8L3P4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.