CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH62262	Soybean	nucleus	93.38	93.38
PGSC0003DMT400024201	Potato	cytosol	48.9	59.62
VIT_15s0046g02660.t01	Wine grape	nucleus	58.99	59.18
HORVU3Hr1G067740.1	Barley	cytosol	18.61	57.84
VIT_18s0001g07750.t01	Wine grape	nucleus	58.36	57.81
Solyc04g076560.2.1	Tomato	nucleus	56.78	57.51
PGSC0003DMT400022451	Potato	nucleus	56.47	56.83
HORVU5Hr1G077970.1	Barley	cytosol	25.55	52.6
GSMUA_Achr4P33490_001	Banana	nucleus	56.15	52.51
CDX93614	Canola	nucleus	48.27	49.04
AT1G07840.2	Thale cress	nucleus	47.95	48.72
Bra018680.1-P	Field mustard	nucleus	47.32	48.39
Zm00001d012087_P005	Maize	nucleus	45.74	43.67
TraesCS5D01G303800.1	Wheat	nucleus	43.53	42.2
EES04083	Sorghum	nucleus	44.16	42.04
TraesCS5B01G296000.1	Wheat	nucleus	43.22	41.64
TraesCS5A01G296700.1	Wheat	nucleus	42.9	41.59
CDX95119	Canola	plastid	48.27	40.91
Zm00001d046836_P003	Maize	nucleus	42.59	40.79
HORVU5Hr1G078110.2	Barley	nucleus, plastid	42.59	35.16
Zm00001d019592_P001	Maize	nucleus	7.89	29.07
HORVU3Hr1G095480.13	Barley	nucleus	9.15	27.36
TraesCS3A01G436800.1	Wheat	nucleus	16.09	25.76
Zm00001d026099_P002	Maize	endoplasmic reticulum, extracellular, vacuole	17.35	21.4
KRH50217	Soybean	cytosol, nucleus, plastid	17.35	8.23
KRH71214	Soybean	nucleus	18.3	8.1

Protein Annotations

EntrezGene:100802099	MapMan:35.2	EMBL:ACUP02003444	ncoils:Coil	EnsemblPlantsGene:GLYMA_06G098500	GO:GO:0000462
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0032040	UniProt:I1K9T1	EnsemblPlants:KRH52980
ProteinID:KRH52980	ProteinID:KRH52980.1	ProteinID:KRH52981.1	PFAM:PF04000	PANTHER:PTHR13237	PANTHER:PTHR13237:SF7
InterPro:Sas10/Utp3/C1D	UniParc:UPI00023C2A1F	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:7836350..7840667

Molecular Weight (calculated)

36894.0 Da

IEP (calculated)

9.874

GRAVY (calculated)

-1.022

Length

317 amino acids

Sequence
(BLAST)

001: MENTAGHNDD SKQKEAPKLA ALLKEMKEGL DTVRRKIQSL TATVKEGQYP TADGFSYLEA KNLLLLNYCQ SLVYYLLRKA KGLSIEDHPV VRSVVEIRLF
101: LEKIRPIDKK QQYQIQKLIQ ASENATRSDI QNKEPVASNK SEDVSKYRPN PDMLVSKVDL TLQDGNEYYQ PVKFAPTSMD LERSSKYERN ALRREKEILK
201: QAKQSDYIRT LMNDMEEKPE EIRDFEGASR EVDRYIAKMD ERARQEEELF TRVPLTKQER KREKYLKKSR NGLQGLTESF YDEIKTLPFG DKTGEQVMGS
301: SNGGRTNNRL KKRKRKH

Best Arabidopsis Sequence Match ( AT1G07840.2 )
(BLAST)

001: MEEITKPVLV GIVKKEAPQL ASVLREMKNV LDVVRSKVEA LTALVKANSF PTAGGISYLE AKHLLLLSYC QDLVYYILRK AKGLSIDGHP LVRSLVEIRM
101: FLEKIRPIDK KLQYQIQKLT TAGGPVTELA HSEGKGSCEA QKSEDLSNYK PKPDLLADKE DDQEDDGVYR PPKFAPMSME DKTSKQERDA ARKEKHFFRQ
201: ATENTYMKDV LDDLEDRPEE IRDYYGVESN EQKRFMAQYE RQQKAEEELF TRAPRTKEDK KREKRLKSSS GLHELTENFY DDIKFLDKDG EKPRSFGRNK
301: RGGPFKKRKT RH

Arabidopsis Description

AT1G07840 protein [Source:UniProtKB/TrEMBL;Acc:Q93ZQ9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.