Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX93614 | Canola | nucleus | 76.28 | 76.28 |
| Bra018680.1-P | Field mustard | nucleus | 69.55 | 70.0 |
| CDX95119 | Canola | plastid | 73.4 | 61.23 |
| HORVU3Hr1G067740.1 | Barley | cytosol | 19.23 | 58.82 |
| PGSC0003DMT400024201 | Potato | cytosol | 47.76 | 57.31 |
| VIT_15s0046g02660.t01 | Wine grape | nucleus | 56.09 | 55.38 |
| Solyc04g076560.2.1 | Tomato | nucleus | 53.53 | 53.35 |
| HORVU5Hr1G077970.1 | Barley | cytosol | 25.96 | 52.6 |
| VIT_18s0001g07750.t01 | Wine grape | nucleus | 52.88 | 51.56 |
| PGSC0003DMT400022451 | Potato | nucleus | 51.92 | 51.43 |
| KRH62262 | Soybean | nucleus | 49.36 | 48.58 |
| KRH52980 | Soybean | nucleus | 48.72 | 47.95 |
| TraesCS5D01G303800.1 | Wheat | nucleus | 47.12 | 44.95 |
| GSMUA_Achr4P33490_001 | Banana | nucleus | 48.72 | 44.84 |
| TraesCS5B01G296000.1 | Wheat | nucleus | 46.79 | 44.38 |
| TraesCS5A01G296700.1 | Wheat | nucleus | 46.47 | 44.34 |
| Zm00001d046836_P003 | Maize | nucleus | 45.83 | 43.2 |
| Zm00001d012087_P005 | Maize | nucleus | 45.83 | 43.07 |
| EES04083 | Sorghum | nucleus | 45.51 | 42.64 |
| HORVU5Hr1G078110.2 | Barley | nucleus, plastid | 46.79 | 38.02 |
| TraesCS3A01G436800.1 | Wheat | nucleus | 21.15 | 33.33 |
| Zm00001d019592_P001 | Maize | nucleus | 8.65 | 31.4 |
| HORVU3Hr1G095480.13 | Barley | nucleus | 8.97 | 26.42 |
| Zm00001d026099_P002 | Maize | endoplasmic reticulum, extracellular, vacuole | 17.95 | 21.79 |
| AT3G28230.2 | Thale cress | nucleus | 6.41 | 11.49 |
| AT2G43650.1 | Thale cress | nucleus | 17.31 | 8.26 |
Protein Annotations
| MapMan:35.2 | EntrezGene:837299 | ProteinID:AEE28190.1 | ProteinID:AEE28191.1 | EMBL:AK317128 | ArrayExpress:AT1G07840 |
| EnsemblPlantsGene:AT1G07840 | RefSeq:AT1G07840 | TAIR:AT1G07840 | RefSeq:AT1G07840-TAIR-G | EnsemblPlants:AT1G07840.2 | TAIR:AT1G07840.2 |
| EMBL:AY056325 | EMBL:AY091190 | Unigene:At.14833 | GO:GO:0000462 | GO:GO:0003674 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005730 | GO:GO:0006139 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0032040 | RefSeq:NP_563798.1 | RefSeq:NP_973785.1 | PFAM:PF04000 |
| PO:PO:0000037 | PO:PO:0000293 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007098 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PANTHER:PTHR13237 | PANTHER:PTHR13237:SF7 |
| UniProt:Q93ZQ9 | InterPro:Sas10/Utp3/C1D | UniParc:UPI00000A9346 | : | : | : |
Description
AT1G07840 protein [Source:UniProtKB/TrEMBL;Acc:Q93ZQ9]
Coordinates
chr1:+:2424064..2426676
Molecular Weight (calculated)
36078.1 Da
IEP (calculated)
9.387
GRAVY (calculated)
-0.926
Length
312 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEITKPVLV GIVKKEAPQL ASVLREMKNV LDVVRSKVEA LTALVKANSF PTAGGISYLE AKHLLLLSYC QDLVYYILRK AKGLSIDGHP LVRSLVEIRM
101: FLEKIRPIDK KLQYQIQKLT TAGGPVTELA HSEGKGSCEA QKSEDLSNYK PKPDLLADKE DDQEDDGVYR PPKFAPMSME DKTSKQERDA ARKEKHFFRQ
201: ATENTYMKDV LDDLEDRPEE IRDYYGVESN EQKRFMAQYE RQQKAEEELF TRAPRTKEDK KREKRLKSSS GLHELTENFY DDIKFLDKDG EKPRSFGRNK
301: RGGPFKKRKT RH
101: FLEKIRPIDK KLQYQIQKLT TAGGPVTELA HSEGKGSCEA QKSEDLSNYK PKPDLLADKE DDQEDDGVYR PPKFAPMSME DKTSKQERDA ARKEKHFFRQ
201: ATENTYMKDV LDDLEDRPEE IRDYYGVESN EQKRFMAQYE RQQKAEEELF TRAPRTKEDK KREKRLKSSS GLHELTENFY DDIKFLDKDG EKPRSFGRNK
301: RGGPFKKRKT RH
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.