Factsheet for PGSC0003DMT400022451

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g076560.2.1	Tomato	nucleus	95.87	96.49
PGSC0003DMT400024201	Potato	cytosol	76.19	92.31
VIT_15s0046g02660.t01	Wine grape	nucleus	67.94	67.72
VIT_18s0001g07750.t01	Wine grape	nucleus	68.57	67.5
HORVU3Hr1G067740.1	Barley	cytosol	19.05	58.82
KRH62262	Soybean	nucleus	57.14	56.78
KRH52980	Soybean	nucleus	56.83	56.47
HORVU5Hr1G077970.1	Barley	cytosol	25.71	52.6
Bra018680.1-P	Field mustard	nucleus	51.75	52.58
AT1G07840.2	Thale cress	nucleus	51.43	51.92
CDX93614	Canola	nucleus	51.11	51.6
GSMUA_Achr4P33490_001	Banana	nucleus	54.6	50.74
Zm00001d012087_P005	Maize	nucleus	46.67	44.28
EES04083	Sorghum	nucleus	46.35	43.84
CDX95119	Canola	plastid	51.11	43.05
TraesCS5B01G296000.1	Wheat	nucleus	44.76	42.86
TraesCS5D01G303800.1	Wheat	nucleus	44.44	42.81
TraesCS5A01G296700.1	Wheat	nucleus	44.13	42.51
Zm00001d046836_P003	Maize	nucleus	43.49	41.39
HORVU5Hr1G078110.2	Barley	nucleus, plastid	44.13	36.2
Zm00001d019592_P001	Maize	nucleus	7.62	27.91
TraesCS3A01G436800.1	Wheat	nucleus	17.46	27.78
HORVU3Hr1G095480.13	Barley	nucleus	8.89	26.42
Zm00001d026099_P002	Maize	endoplasmic reticulum, extracellular, vacuole	16.51	20.23

Protein Annotations

EnsemblPlants:PGSC0003DMT400022451	EnsemblPlantsGene:PGSC0003DMG400008701	EntrezGene:102585690	InterPro:Sas10/Utp3/C1D	ncoils:Coil	PANTHER:PTHR13237
PANTHER:PTHR13237:SF7	PFAM:PF04000	PGSC:PGSC0003DMG400008701	RefSeq:XP_015159175.1	SEG:seg	UniParc:UPI000295E415
UniProt:M1AGQ9	MapMan:35.2	:	:	:	:

Description

Something about silencing protein sas10 [Source:PGSC_GENE;Acc:PGSC0003DMG400008701]

Coordinates

chr4:-:52558198..52564365

Molecular Weight (calculated)

36191.7 Da

IEP (calculated)

10.144

GRAVY (calculated)

-0.863

Length

315 amino acids

Sequence
(BLAST)

001: MASLETSQRI SRQAPQLVTV LKEMKAGLDT VSLKVQALTA KVKADHFSTA DGISYLETKH LLLLNYCQSL VYYLLRKAKG LSIEGHPVVR SLVEMRLFLE
101: KIRPIDKKLQ YQIQKLTRDS DTASEKSVIS EKGTDTQKED LLKYRPKPDM LVRKTSNTAE DGANVYRPPK FAPASMGEEK MSKQERNELR REKERLRNAK
201: QSPYMIDLLN DLEGRPEEVR EVVGSESREL TNYMAKMEER AKREEEAFDR APLTKLEKKK MKHLKKSRNG LLGLTDSFYD EIKSLPLGEP VSEQSENFEN
301: GGTGIKQQKK RKRRN

Best Arabidopsis Sequence Match ( AT1G07840.2 )
(BLAST)

001: MEEITKPVLV GIVKKEAPQL ASVLREMKNV LDVVRSKVEA LTALVKANSF PTAGGISYLE AKHLLLLSYC QDLVYYILRK AKGLSIDGHP LVRSLVEIRM
101: FLEKIRPIDK KLQYQIQKLT TAGGPVTELA HSEGKGSCEA QKSEDLSNYK PKPDLLADKE DDQEDDGVYR PPKFAPMSME DKTSKQERDA ARKEKHFFRQ
201: ATENTYMKDV LDDLEDRPEE IRDYYGVESN EQKRFMAQYE RQQKAEEELF TRAPRTKEDK KREKRLKSSS GLHELTENFY DDIKFLDKDG EKPRSFGRNK
301: RGGPFKKRKT RH

Arabidopsis Description

AT1G07840 protein [Source:UniProtKB/TrEMBL;Acc:Q93ZQ9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.