Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d019592_P001 | Maize | nucleus | 24.7 | 95.35 |
| Zm00001d046836_P003 | Maize | nucleus | 90.06 | 90.33 |
| EES04083 | Sorghum | nucleus | 87.35 | 87.09 |
| TraesCS5D01G303800.1 | Wheat | nucleus | 65.96 | 66.97 |
| TraesCS5A01G296700.1 | Wheat | nucleus | 65.36 | 66.36 |
| TraesCS5B01G296000.1 | Wheat | nucleus | 65.66 | 66.26 |
| HORVU5Hr1G077970.1 | Barley | cytosol | 30.72 | 66.23 |
| HORVU3Hr1G067740.1 | Barley | cytosol | 19.88 | 64.71 |
| HORVU3Hr1G095480.13 | Barley | nucleus | 18.07 | 56.6 |
| HORVU5Hr1G078110.2 | Barley | nucleus, plastid | 64.76 | 55.99 |
| PGSC0003DMT400024201 | Potato | cytosol | 41.57 | 53.08 |
| TraesCS3A01G436800.1 | Wheat | nucleus | 31.02 | 52.02 |
| Zm00001d026099_P002 | Maize | endoplasmic reticulum, extracellular, vacuole | 38.55 | 49.81 |
| VIT_18s0001g07750.t01 | Wine grape | nucleus | 46.69 | 48.44 |
| Solyc04g076560.2.1 | Tomato | nucleus | 45.48 | 48.24 |
| VIT_15s0046g02660.t01 | Wine grape | nucleus | 45.78 | 48.1 |
| GSMUA_Achr4P33490_001 | Banana | nucleus | 48.49 | 47.49 |
| PGSC0003DMT400022451 | Potato | nucleus | 44.28 | 46.67 |
| CDX93614 | Canola | nucleus | 43.37 | 46.15 |
| AT1G07840.2 | Thale cress | nucleus | 43.07 | 45.83 |
| Bra018680.1-P | Field mustard | nucleus | 42.77 | 45.81 |
| KRH52980 | Soybean | nucleus | 43.67 | 45.74 |
| KRH62262 | Soybean | nucleus | 42.47 | 44.48 |
| CDX95119 | Canola | plastid | 43.37 | 38.5 |
| Zm00001d014256_P003 | Maize | cytosol | 27.41 | 35.55 |
| Zm00001d009962_P002 | Maize | mitochondrion, plastid | 15.06 | 25.51 |
| Zm00001d031326_P003 | Maize | plasma membrane | 19.88 | 10.43 |
Protein Annotations
| EMBL:BT036964 | EMBL:BT054889 | EMBL:BT086613 | EnsemblPlants:Zm00001d012087_P005 | EnsemblPlants:Zm00001d012087_T005 | EnsemblPlantsGene:Zm00001d012087 |
| InterPro:Sas10/Utp3/C1D | PANTHER:PTHR13237 | PANTHER:PTHR13237:SF7 | PFAM:PF04000 | ProteinID:AQK98772.1 | ProteinID:AQK98773.1 |
| ProteinID:AQK98774.1 | ProteinID:AQK98775.1 | ProteinID:AQK98776.1 | ProteinID:AQK98777.1 | SEG:seg | UniParc:UPI00017B6E78 |
| UniProt:B4FIM6 | MapMan:35.2 | : | : | : | : |
Description
Sas10/Utp3/C1D family
Coordinates
chr8:+:167977163..167980265
Molecular Weight (calculated)
37410.4 Da
IEP (calculated)
9.447
GRAVY (calculated)
-0.998
Length
332 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAASAAAEA SGESKNEFLI RDDAPGLLAA LKEMKDGLDL VRGKVEAITR KVKANQLPAA NGIGYLEAKN HLLLGYCQDI VYYLLRKAKG LSVDGHPVVR
101: SLVEIRLFLE KIRPIDKKAE YQIQKLTDAA DNATVREKPG NAQAKGKDGH SDEEDLLKYR PNPDMMDTKP GPDGQDTDGV YRPPKFMPTS MDDEEKRRKN
201: DSRRDKAIAR VAIENPYIKE IIDDAADRPE EWKETVGDES REFGRYMRQR EEQEKQEEEL FTRAPVTKRD KQIEKRIRRQ LHGLGGLTDG FDLGMNMLLG
301: GDKEDDGGSS KSHGKSGNRK KHLKSSKKRK RH
101: SLVEIRLFLE KIRPIDKKAE YQIQKLTDAA DNATVREKPG NAQAKGKDGH SDEEDLLKYR PNPDMMDTKP GPDGQDTDGV YRPPKFMPTS MDDEEKRRKN
201: DSRRDKAIAR VAIENPYIKE IIDDAADRPE EWKETVGDES REFGRYMRQR EEQEKQEEEL FTRAPVTKRD KQIEKRIRRQ LHGLGGLTDG FDLGMNMLLG
301: GDKEDDGGSS KSHGKSGNRK KHLKSSKKRK RH
001: MEEITKPVLV GIVKKEAPQL ASVLREMKNV LDVVRSKVEA LTALVKANSF PTAGGISYLE AKHLLLLSYC QDLVYYILRK AKGLSIDGHP LVRSLVEIRM
101: FLEKIRPIDK KLQYQIQKLT TAGGPVTELA HSEGKGSCEA QKSEDLSNYK PKPDLLADKE DDQEDDGVYR PPKFAPMSME DKTSKQERDA ARKEKHFFRQ
201: ATENTYMKDV LDDLEDRPEE IRDYYGVESN EQKRFMAQYE RQQKAEEELF TRAPRTKEDK KREKRLKSSS GLHELTENFY DDIKFLDKDG EKPRSFGRNK
301: RGGPFKKRKT RH
101: FLEKIRPIDK KLQYQIQKLT TAGGPVTELA HSEGKGSCEA QKSEDLSNYK PKPDLLADKE DDQEDDGVYR PPKFAPMSME DKTSKQERDA ARKEKHFFRQ
201: ATENTYMKDV LDDLEDRPEE IRDYYGVESN EQKRFMAQYE RQQKAEEELF TRAPRTKEDK KREKRLKSSS GLHELTENFY DDIKFLDKDG EKPRSFGRNK
301: RGGPFKKRKT RH
Arabidopsis Description
AT1G07840 protein [Source:UniProtKB/TrEMBL;Acc:Q93ZQ9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.