Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 4
- nucleus 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d012087_P005 | Maize | nucleus | 25.51 | 15.06 |
| Zm00001d046836_P003 | Maize | nucleus | 25.0 | 14.8 |
| Zm00001d031326_P003 | Maize | plasma membrane | 15.31 | 4.74 |
| Zm00001d014256_P003 | Maize | cytosol | 3.57 | 2.73 |
| Zm00001d026099_P002 | Maize | endoplasmic reticulum, extracellular, vacuole | 2.55 | 1.95 |
| Zm00001d019592_P001 | Maize | nucleus | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:Zm00001d009962_P002 | EnsemblPlants:Zm00001d009962_T002 | EnsemblPlantsGene:Zm00001d009962 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| ProteinID:AQK93168.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0008450FEF | UniProt:A0A1D6FND5 | MapMan:35.2 |
Description
Sas10/Utp3/C1D family
Coordinates
chr8:-:92539196..92543525
Molecular Weight (calculated)
21981.3 Da
IEP (calculated)
9.956
GRAVY (calculated)
0.039
Length
196 amino acids
Sequence
(BLAST)
(BLAST)
001: MVPTKRKRST GAAVVATVVK WKVGDLVLTK MKSFPAWLAM AGVSHLGFGG SLGRLVSFSK DMRSLMEPAY GNMKNSQCFM KRKELASEAH ARCNLMFETI
101: PKFARCNLML QSYIERHTYS LHYIVYDKSQ VKANQLPVAN MIGYLEAKNH LLLGYCQDIV YYLLRKAKGL SVDGHPIACL LELLLQPSVS SLPYVD
101: PKFARCNLML QSYIERHTYS LHYIVYDKSQ VKANQLPVAN MIGYLEAKNH LLLGYCQDIV YYLLRKAKGL SVDGHPIACL LELLLQPSVS SLPYVD
001: MEEITKPVLV GIVKKEAPQL ASVLREMKNV LDVVRSKVEA LTALVKANSF PTAGGISYLE AKHLLLLSYC QDLVYYILRK AKGLSIDGHP LVRSLVEIRM
101: FLEKIRPIDK KLQYQIQKLT TAGGPVTELA HSEGKGSCEA QKSEDLSNYK PKPDLLADKE DDQEDDGVYR PPKFAPMSME DKTSKQERDA ARKEKHFFRQ
201: ATENTYMKDV LDDLEDRPEE IRDYYGVESN EQKRFMAQYE RQQKAEEELF TRAPRTKEDK KREKRLKSSS GYVFALVGN
101: FLEKIRPIDK KLQYQIQKLT TAGGPVTELA HSEGKGSCEA QKSEDLSNYK PKPDLLADKE DDQEDDGVYR PPKFAPMSME DKTSKQERDA ARKEKHFFRQ
201: ATENTYMKDV LDDLEDRPEE IRDYYGVESN EQKRFMAQYE RQQKAEEELF TRAPRTKEDK KREKRLKSSS GYVFALVGN
Arabidopsis Description
AT1G07840 protein [Source:UniProtKB/TrEMBL;Acc:Q93ZQ9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.