Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY30426 | Canola | nucleus | 47.7 | 36.56 |
| Bra037695.1-P | Field mustard | nucleus | 50.0 | 35.08 |
| CDY23385 | Canola | nucleus | 50.0 | 32.95 |
| CDY23387 | Canola | nucleus | 30.46 | 27.32 |
| AT2G43650.1 | Thale cress | nucleus | 58.05 | 15.44 |
| AT1G07840.2 | Thale cress | nucleus | 11.49 | 6.41 |
Protein Annotations
| MapMan:35.2 | EntrezGene:822449 | ProteinID:AEE77421.1 | ArrayExpress:AT3G28230 | EnsemblPlantsGene:AT3G28230 | RefSeq:AT3G28230 |
| TAIR:AT3G28230 | RefSeq:AT3G28230-TAIR-G | EnsemblPlants:AT3G28230.2 | TAIR:AT3G28230.2 | Unigene:At.53531 | ncoils:Coil |
| UniProt:F4IZ10 | GO:GO:0000462 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005730 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0032040 |
| RefSeq:NP_001118727.1 | PFAM:PF09368 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0001016 | PO:PO:0001017 |
| PO:PO:0001078 | PO:PO:0004507 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0020090 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PANTHER:PTHR13237 |
| PANTHER:PTHR13237:SF8 | InterPro:Sas10_C_dom | UniParc:UPI000016359A | SEG:seg | : | : |
Description
Something about silencing protein [Source:UniProtKB/TrEMBL;Acc:F4IZ10]
Coordinates
chr3:+:10529215..10530199
Molecular Weight (calculated)
20311.4 Da
IEP (calculated)
11.229
GRAVY (calculated)
-1.517
Length
174 amino acids
Sequence
(BLAST)
(BLAST)
001: MKIDNAREEK KKKGQKRKHQ QNDQADMEML KLRAALEGKH RSNGSTVLKS AKAQKRQKSE DSEDEFYRQV KQKQEAKKAA KAEIYSRKPY LIPSSPDLVD
101: GRRLISNQMA SNRGLTRKRN KDHKNPRKKY RDQHKKIVIN RKGQVRDIRT QVGPYAGETR GINPYTSRSI RIKN
101: GRRLISNQMA SNRGLTRKRN KDHKNPRKKY RDQHKKIVIN RKGQVRDIRT QVGPYAGETR GINPYTSRSI RIKN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.